2020

• Genomic Islands of Divergence Infer a Phenotypic Landscape in Pacific Lamprey. August 19, 2020.

  Jon Hess, Jeramiah Smith, Nataliya Timoshevskaya, Cyndi Baker, Christopher Caudill, David Graves, Matthew Keefer, Andrew Kinziger, Mary Moser, Laurie Porter, Greg Silver, Steven Whitlock, and Shawn Narum

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• Detecting Genomic Variation Underlying Phenotypic Characteristics of Reintroduced Coho salmon (Oncorhynchus kisutch). August 25, 2020. Rebekah Horn, Cory Kamphaus, Keely Murdoch, and Shawn Narum.
• Tracking Fisheries Through Time: The American Fisheries Society as a Historical Lens. August 27, 2020. Gary Whelan, Diana Day, John Casselman, Laura Gephart, Carolyn Hall, James Lichatowich, Michael Matylewich, Leandro Miranda, Leanne Roulson, Patrick Shirey, Norman Mercado-Silva, John Waldman, and Drue Winters..
• Genomic Signatures Among Oncorhynchus nerka Ecotypes to Inform Conservation and Management of Endangered Sockeye Salmon. December 1, 2016. Krista Nichols, Christine Kozfkay, and Shawn Narum.
• 2017 Annual Report: Genetic Assessment of Columbia River Stocks. June 12, 2018. Daniel Hasselman, Stephanie Harmon, Amanda Matala, Andrew Matala, Stephen Micheletti, and Shawn Narum.
• Frequency of Pinniped-Caused Scars and Wounds on Adult Spring–Summer Chinook and Sockeye Salmon Returning to the Columbia River. March 1, 1998. Jeffery Fryer.
• Establishment of Time-resolved Fluoroimmunoassays for Detection of Growth Hormone and Insulin-like Growth Factor I in Rainbow Trout Plasma. October 1, 2020. Lea Medeiros, James Nagler and Andrew Pierce.
• Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2019. April 30, 2020. Seth White, Casey Justice, Lauren Burns, Ben Staton, David Graves, and Matthew Kaylor.
• 2019 Annual Report: Genetic Assessment of Columbia River Stocks. July 1, 2020. Jon Hess, Erin Collins, Stephanie Harmon, Rebekah Horn, Ilana Koch, Jeff Stephenson, Stuart Willis, and Shawn Narum.
• Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2018. May 31, 2020. Jeffrey Fryer, John Whiteaker, Denise Kelsey, and Jon Hess.
• Influence of Landscape and Environment on Salmonid Genetics: 2017 Annual Report. February 7, 2018. Shawn Narum, Zhongqi Chen, Amanda Matala, Andrew Matala, and Steven Micheletti.
• Influence of Landscape and Environment on Salmonid Genetics: 2016 Annual Report. June 12, 2017. Shawn Narum, Nathan Campbell, Jon Hess, Amanda Matala, Andrew Matala, and Steven Micheletti.
• Influence of Landscape and Environment on Salmonid Genetics: 2015 Annual Report. February 22, 2016. Shawn Narum, Nathan Campbell, Andrew Matala, Ben Hecht, and Jon Hess.
• Influence of Landscape and Environment on Salmonid Genetics: 2014 Annual Report. April 13, 2015. Shawn Narum, Nathan Campbell, Andrew Matala, Ben Hecht, and Jon Hess.
• Influence of Landscape and Environment on Salmonid Genetics: 2013-2014 Annual Report. August 29, 2014. Shawn Narum, Nathan Campbell, Andrew Matala, Ben Hecht, and Jon Hess.
• Influence of Landscape and Environment on Salmonid Genetics: 2012-2013 Annual Report. June 30, 2013. Shawn Narum, Nate Campbell, Ben Hecht, and Jon Hess.
• Influence of Landscape and Environment on Salmonid Genetics: 2011-2012 Annual Report. June 30, 2012. Shawn Narum, Nate Campbell, Ben Hecht, and Jon Hess.
• Influence of Landscape and Environment on Salmonid Genetics: 2010-2011 Annual Report. May 27, 2011. Shawn Narum, Andrew Matala, and Nate Campbell.
• Influence of Landscape and Environment on Salmonid Genetics: 2009-2010 Annual Report. July 15, 2010. Shawn Narum, Andrew Matala, and Nate Campbell.
• Pacific Lamprey Research and Restoration: Annual Report 1996. August 5, 1997. Aaron Jackson, Paul Kissner, Douglas Hatch, Blaine Parker, David Close, Martin Fitzpatrick, and Hiram Li.
• Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam: 2011 Annual Progress Report. August 1, 2012. Michael Ackerman, Jesse McCane, Craig Steele, Matthew Campbell, Andrew Matala, Jon Hess, and Shawn Narum.
• Restricted Gene Flow Between Resident Oncorhynchus mykiss and an Admixed Population of Anadromous Steelhead. October 1, 2017. Andrew Matala, Brady Allen, Shawn Narum, and Elaine Harvey.
• Influence of Landscape and Environment on Salmonid Genetics: 2018 Annual Report. June 20, 2019. Shawn Narum, Zhongqi Chen, and Jon Hess.
• A Hierarchical Approach to Joint Estimation of Juvenile Salmonid Abundance and Detection Efficiency. March 5, 2020. Ben Staton, Casey Justice, Seth White, Ted Sedell, Lauren Burns, and Matt Kaylor.
• Validation and Association of Candidate Markers for Adult Migration Timing and Fitness in Chinook Salmon. June 8, 2020. Ilana Koch and Shawn Narum.
• Carcass Additions Influence Food Webs Through Bottom-Up and Direct Consumption Pathways Along a Fish Species Assemblage Gradient. May 23, 2020. Matthew Kaylor, Seth White, Edwin Sedell, Ashley Sanders, and Dana Warren.
• Carcass Additions Increase Juvenile Salmonid Growth, Condition, and Size in an Interior Columbia River Basin Tributary. April 1, 2020. Matthew Kaylor, Seth White, Edwin Sedell, and Dana Warren.
• Studies into Factors Limiting the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2018. April 10, 2020. Jeffrey Fryer, Denise Kelsey, Howie Wright, Skyeler Folks, Richard Bussanich, Kim Hyatt, Dan Selbie, and Margot Stockwell.
• The Feasibility of Documenting and Estimating Adult Fish Passage at Large Hydroelectric Facilities in the Snake River Using Video Technology: Final Report 1993. July 1, 1994. Douglas Hatch, David Pederson, Jeffrey Fryer, Matthew Schwartzberg, and Andrew Wand.
• The Feasibility of Documenting and Estimating Adult Fish Passage at Large Hydroelectric Facilities in the Snake River Using Video Technology: Annual Report 1992. March 1, 1993. Douglas Hatch, Andrew Wand, David Pederson, and Matthew Schwartzberg.
• Patterns of Genomic Variation in Coho Salmon Following Reintroduction to the Interior Columbia River. December 1, 2017. Nathan Campbell, Cory Kamphaus, Keely Murdoch, and Shawn Narum.
• Effects of Physiological Condition on Aspects of Repeat Spawning in Female Steelhead Trout Reconditioned in Captivity. March 1, 2020. Laura Jenkins, Andrew Pierce, Christopher Caudill, Neil Graham, Lea Medeiros, Douglas Hatch, and James Nagler.
• Selection at a Genomic Region of Major Effect is Responsible for Evolution of Complex Life Histories in Anadromous Steelhead. September 15, 2018. Steven Micheletti, Jon Hess, Joseph Zendt, and Shawn Narum.
• Landscape Features Along Migratory Routes Influence Adaptive Genomic Variation in Anadromous Steelhead (Oncorhynchus mykiss). January 1, 2018. Steven Micheletti, Amanda Matala, Andrew Matala, and Shawn Narum.
• Pacific Lamprey Research and Restoration: Annual Report 1997. August 5, 1998. Aaron Jackson, Douglas Hatch, Blaine Parker, David Close, Martin Fitzpatrick, and Hiram Li.
• Influence of Ocean and Freshwater Conditions on Columbia River Sockeye Salmon Oncorhynchus Nerka Adult Return Rates. February 27, 2014. John Williams, Steven Smith, Jeffrey Fryer, Mark Scheuerell, William Muir, Tom Flagg, Richard Zabel, John Ferguson, and Edmundo Casillas.
• Formation of Population Genetic Structure Following the Introduction and Establishment of Non-native American Shad (Alosa sapidissima) Along the Pacific Coast of North America. November 1, 2018. Daniel Hasselman, Paul Bentzen, Shawn R. Narum, and Thomas Quinn.
• Salmon Restoration – A Native American Perspective from the Columbia River. December 1, 2006. Andre Talbot and Peter Galbreath.
• A Computerized Editing System for Video Monitoring of Fish Passage. August 1, 1998. Douglas Hatch, Jeffery Fryer, Matthew Schwartzberg, David Pederson, and Andrew Wand.
• Protocol for Snorkel Surveys of Fish Densities: A component of Monitoring Recovery Trends in Key Spring Chinook Habitat Variables and Validation of Population Viability Indicators. May 1, 2012. Seth White, Casey Justice, and Dale McCullough.

2019

• A Natural‐Origin Steelhead Population's Response to Exclusion of Hatchery Fish. March 1, 2019. Ian Courter, Garth Wyatt, Russell Perry, John Plumb, Forrest Carpenter, Nicklaus Ackerman, Robert Lessard, and Peter Galbreath.
• 2016 Annual Report: Genetic Assessment of Columbia River Stocks. June 5, 2017. Daniel Hasselman, Nathan Campbell, Andrew Matala, Stephanie Harmon, Stephen Micheletti, and Shawn Narum.
• Testing for Delayed Mortality Effects in the Early Marine Life History of Columbia River Basin Yearling Chinook Salmon. January 27, 2014. Erin Rechisky, David Welch, Aswea Porter, Jon Hess, and Shawn Narum.
• Physiological and Genomic Signatures of Evolutionary Thermal Adaptation in Redband Trout from Extreme Climates. October 1, 2018. Zhongqi Chen, Anthony Farrell, Amanda Matala, Nicholas Hoffman, and Shawn R. Narum.
• Estimation of Pacific Salmon Escapement with a Time‐lapse Video Recording Technique. August 1, 1994. Douglas Hatch, Matthew Schwartzberg, and Phillip Mundy.
• Investigations of Adult Salmonids at Bonneville Dam for Gas Bubble Trauma, 1995. September 14, 1995. David Pederson, Laura Gramman, and Jeffrey Fryer.
• Long-term Reconstruction of Deep-water Oxygen Conditions in Osoyoos Lake (British Columbia, Canada): Implications for Okanagan River Sockeye Salmon. September 19, 2018. Brigitte Simmatis, Adam Jeziorski, Andrea Zemanek, Daniel Selbie, Kim Hyatt, Jeff Fryer, Brian Cumming, and John Smol.
• Hydrologic Connectivity Affects Fish Assemblage Structure, Diversity, and Ecological Traits in the Unregulated Gambia River, West Africa. December 1, 2011. Seth White, Markéta Ondračková, and Martin Reichard.
• Young-of-the-year Fish Assemblages as an Alternative to Adult Fish Monitoring for Ecological Quality Evaluation of Running Waters. February 9, 2010. Pavel Jurajda, Ondřej Slavík, Seth White, and Zdeněk Adámek.
• Plasma Nesfatin-1 is not Affected by Long-Term Food Restriction and does not Predict Rematuration Among Iteroparous Female Rainbow Trout (Oncorhynchus mykiss). January 9, 2014. Lucius Caldwell, Andrew Pierce, Larry Riley, Christine Duncan, and James Nagler.
• Marine Biology of the Pacific Lamprey Entosphenus Tridentatus. August 29, 2019. Benjamin Clemens, Laurie Weitkamp, Kevin Siwicke, Joy Wade, Julianne Harris, Jon Hess, Laurie Porter, Keith Parker, Trent Sutton, and Alexei Orlov.
• The Failure of Existing Plans to Protect Salmon Habitat in the Clearwater National Forest in Idaho. June 4, 1997. Al Espinosa Jr., Jon Rhodes, and Dale McCullough.
• Trapping Effects and Fisheries Research: A Case Study of Sockeye Salmon in the Wenatchee River, USA. September 29, 2014. Joshua Murauskas, Jeffery Fryer, Bryan Nordlund, and Joseph Miller.
• Metabolic Endocrine Factors Involved in Spawning Recovery and Rematuration of Iteroparous Female Rainbow Trout (Oncorhynchus mykiss). December 1, 2013. Lucius Caldwell, Andrew Pierce, and James Nagler.
• Evaluation of a Trap-and-transport Program for a Threatened Population of Steelhead (Oncorhynchus mykiss). October 1, 2019. Dana Weigel, Ilana Koch, Fred Monzyk, Cameron Sharpe, Shawn Narum, and Christopher Caudill.
• Steelhead Kelt Reconditioning and Reproductive Success: 2012 Annual Report. June 29, 2013. Douglas Hatch, Ryan Branstetter, Jeff Stephenson, Andrew Pierce, Andrew Matala, and Jeremiah Newell.
• Small – But Not Easy: Evaluation of Sampling Methods in Floodplain Lakes Including Whole-lake Sampling. February 3, 2009. Pavel Jurajdaa, Michal Janáč, Seth White, and Markéta Ondračkováa.
• The Role of Water in the Landscape. June 4, 2019. Martin Rulík and Seth White.
• Life - Cycle Model for Upper Grande Ronde and Catherine Creek Spring Chinook: Evaluation of Habitat Restoration and Population Recovery Strategies. December 4, 2018. Nick Weber, Nick Bouwes, Casey Justice, and Seth White.
• Columbia Habitat Monitoring Program Report - 2013 Third Year Lessons Learned Project Synthesis Report. February 13, 2015. Philip Bailey, Sara Bangen, Chris Beasley, Boyd Bouwes, Nicolas Bouwes, Richard Carmichael, Stephen Fortney, Jeremiah Heitke, Andrew Hill, Chris Horn, Martha Jensen, David Larsen, Casey Justice, Chris Jordan, Gary O’Brian, Meagan Polino, Matt Nahorniak, Pamela Nelle, Steve Rentmeester, Carl Saunders, Kevin See, Keith Steele, Edwin Sedell, Sarah Walker, Eric Wall, Carol Volk, Seth White, and Joe Wheaton.
• Elevated Plasma Triglycerides and Growth Rate are Early Indicators of Reproductive Status in Post-spawning Female Steelhead Trout (Oncorhynchus mykiss). July 26, 2019. Laura Jenkins, Andrew Pierce, Neil Graham, Lea Medeiros, Douglas Hatch, and James Nagler.
• Reproductive Performance and Energy Balance in Consecutive and Skip Repeat Spawning Female Steelhead Reconditioned in Captivity. June 19, 2018. Laura Jenkins, Andrew Pierce, Neil Graham, Ryan Branstetter, Douglas Hatch, and James Nagler.
• Conservation of Aquatic and Fishery Resources in the Pacific Northwest: Implications of New Science for the Aquatic Conservation Strategy of the Northwest Forest Plan - Final Report. July 30, 2014. Christopher Frissell, Rowan Baker, Dominick DellaSala, Robert Hughes, James Karr, Dale McCullough, Richard Nawa, Jon Rhodes, Mary Scurlock, and Robert Wissmar.
• The Case for Regime-based Water Quality Standards. February 1, 2004. Geoffrey Poole, Jason Dunham, Druscilla Keenan, Sally Sauter, Dale McCullough, Christopher Mebane, Jeffrey Lockwood, Don Essig, Mark Hicks, Debra Sturdevant, Elizabeth Materna, Shelley Spalding, John Risley, and Marianne Deppman.
• Evidence for the Genetic Basis and Epistatic Interactions Underlying Ocean- and River-maturing Ecotypes of Pacific Lamprey (Entosphenus tridentatus) Returning to the Klamath River, California. May 27, 2019. Keith Parker, Jon Hess, Shawn Narum, and Andrew Kinziger.
• Relating Spatial Patterns of Stream Metabolism to Distributions of Juveniles Salmonids at the River Network Scale. June 24, 2019. Matt Kaylor, Seth White, Carl Saunders, and Dana Warren.
• Maintaining a Wild Phenotype in a Conservation Hatchery Program for Chinook Salmon: The Effect of Managed Breeding on Early Male Maturation. May 15, 2019. Donald Larsen, Deborah Harstad, Abby Fuhrman, Curtis Knudsen, Steven Schroder, William Bosch, Peter Galbreath, David Fast, and Brian Beckman.
• Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2017. May 24, 2019. Jeffrey Fryer, John Whiteaker, Denise Kelsey, and Jon Hess.
• What Goes Up Does Not Come Down: the Stock Composition and Demographic Characteristics of Upstream Migrating Steelhead Differ from Post-spawn Emigrating Kelts. November 1, 2016. Andrew Matala, Douglas Hatch, Scott Everett, Michael Ackerman, Brett Bowersox, Matthew Campbell, and Shawn Narum.
• Aquatic Landscape Genomics and Environmental Effects on Genetic Variation. March 20, 2019. Jared Grummer, Luciano Beheregaray, Louis Bernatchez, Brian Hand, Gordon Luikart, Shawn Narum, and Eric Taylor.
• Development and Application of Single-Nucleotide Polymorphism (SNP) Genetic Markers for Conservation Monitoring of Burbot Populations. February 25, 2019. Matthew Campbell, Ninh Vu, Amanda LaGrange, Ryan Hardy, Tyler Ross, and Shawn Narum.
• Plasma Insulin-like Growth Factor-1 is Unrelated to Female Reproductive Development in a Wild Population of Dolly Varden charr Salvelinus malma (Walbaum, 1792). January 2, 2019. James J. Nagler, Peter Bangs, Lea Medeiros and Andrew Pierce.
• Parentage-Based Tagging: Reviewing the Implementation of a New Tool for an Old Problem. April 19, 2019. Craig A. Steele, Maureen Hess, Shawn Narum, and Matthew Campbell.
• Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2018. April 2, 2019. Seth White, Casey Justice, Lauren Burns, David Graves, Denise Kelsey, and Matthew Kaylor.
• Kelt Reconditioning and Reproductive Success Evaluation Research – 2018 Annual Technical Report. April 1, 2019. Doug Hatch, Ryan Branstetter, Jeff Stephenson, Andrew Pierce, Robert Lessard, Jeremiah Newell, Andrew Matala, William Bosch, Scott Everett, Neil Graham, Lea Medeiros, Laura Jenkins, Brian Hoffman, Nick Hoffman, Tim Cavileer, James Nagler, Micheal Fiander, Chris Frederickson, Joe Blodgett, David Fast, and Rebecca Johnson.
• 2018 Annual Report: Genetic Assessment of Columbia River Stocks. April 9, 2019. Jon Hess, Stephanie Harmon, Daniel Hasselman, Rebekah Horn, Amanda LaGrange, Andrew Matala, and Shawn Narum.
• Long-term Evaluation of Fitness and Demographic Effects of a Chinook Salmon Supplementation Program. October 9, 2018. Ilana Janowitz-Koch, Craig Rabe, Ryan Kinzer, Doug Nelson, Maureen Hess, and Shawn Narum.
• Kelt Reconditioning and Reproductive Success Evaluation Research – 2017 Annual Technical Report. January 11, 2019. Doug Hatch, Ryan Branstetter, Jeff Stephenson, Andrew Pierce, Jeremiah Newell, William Bosch, Neil Graham, Lea Medeiros, Laura Jenkins, Brian Hoffman, Jana Vrtelova-Holbert, Tim Cavileer, James Nagler, Chris Frederickson, Joe Blodgett, David Fast, Micheal Fiander, Robert Lessard, John Whiteaker, Scott Everett, and Rebecca Johnson..

2018

• Conservation Planning for Climate Change Impacts to Benthic Macroinvertebrate Assemblages in the Columbia River Basin. December 18, 2018. Seth White, David Graves, Dianne Barton, and Laura Gephart.
• Early Observations from Monitoring of a Reintroduction Program: the Return of Sockeye Salmon to a Nursery Lake of Historical Importance. November 14, 2018. Andrew Matala, Shawn Narum, Brian Saluskin, Mark Johnston, Jeremiah Newell, David Fast, and Peter Galbreath.
• Estimation of the Effective Number of Breeders for Warm Springs River Spring Chinook Salmon - Broodyears 2015 and 2016. November 9, 2018. Peter Galbreath, Ilana Janowitz-Koch, Graham Boostrom, and Cyndi Baker.
• Kelt Reconditioning: A Research Project to Enhance Iteroparity in Columbia Basin Steelhead (Oncorhynchus mykiss) - 2003 Annual Report. November 4, 2003. Douglas Hatch, Ryan Branstetter, Joe Blodgett, Bill Bosch, David Fast, and Todd Newsome.
• Reproductive Performance and Energy Balance in Consecutive and Skip Repeat Spawning Female Steelhead Reconditioned in Captivity. September 1, 2018. Laura Jenkins, Andrew Pierce, Neil Graham, Ryan Branstetter, Douglas Hatch, and James Nagler.
• Anadromous Salmonid Recovery in the Umatilla River Basin, Oregon: A Case Study. December 1, 2000. Jennifer Phillips, Jill Ory and André Talbot.
• Plasma 11-ketotestosterone in Individual Age 1+ Spring Chinook Salmon Juvenile Males Accurately Predicts Age 2 Maturation Status. June 22, 2018. Lea Medeiros, Peter Galbreath, Curtis Knudsen, Chad Stockton, Ilana Koch, William Bosch, Shawn Narum, James Nagler and Andrew Pierce.
• Evaluating Minijack Rates in Spring Chinook Salmon. June 13, 2018. Lea Medeiros, Peter Galbreath, Curtis Knudsen, Chad Stockton, Ilana Koch, William Bosch, Shawn Narum, James Nagler and Andrew Pierce.
• Utility of Pooled Sequencing for Association Mapping in Nonmodel Organisms. March 15, 2018. Steven Micheletti and Shawn Narum.
• Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2016. June 30, 2018. Jeffrey Fryer, John Whiteaker, and Denise Kelsey.
• Studies into Factors Limiting the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2016 and 2017. June 29, 2018. Jeffrey Fryer, Denise Kelsey, Howie Wright, Skyeler Folks, Richard Bussanich, Kim Hyatt, Dan Selbie, and Margot Stockwell.
• The Sea Lamprey Germline Genome Provides Insights into Programmed Genome Rearrangement and Vertebrate Evolution. February 1, 2018. Jeramiah Smith, Nataliya Timoshevskaya, Chengxi Ye, Carson Holt, Melissa Keinath, Hugo Parker, Malcolm Cook, Jon Hess, Shawn Narum, Francesco Lamanna, Henrik Kaessmann, Vladimir Timoshevskiy, Courtney Waterbury, Cody Saraceno, Leanne Wiedemann, Sofia Robb, Carl Baker, Evan Eichler, Dorit Hockman, Tatjana Sauka-Spengler, Mark Yandell, Robb Krumlauf, Greg Elgar, and Chris Amemiya.
• Mechanisms of Thermal Adaptation and Evolutionary Potential of Conspecific Populations to Changing Environments. February 1, 2018. Zhongqi Chen, Anthony Farrell, Amanda Matala, and Shawn Narum.
• Monitoring Salmonid Hatchery Stocks with Parentage Based Tagging technology in the Columbia River Basin. December 6, 2016. Maureen Hess, Daniel Hasselman, Stephanie Harmon, Craig Steele, Matthew Campbell, and Shawn Narum.
• Supportive Breeding Boosts Natural Population Abundance with Minimal Negative Impacts on Fitness of Wild Chinook Salmon in Johnson Creek. October 12, 2012. Maureen Hess, Craig Rabe, Jason Vogel, Jeff Stephenson, Doug Nelson, and Shawn Narum.
• A Cautionary Tale for in situ Fluorometric Measurement of Stream Chlorophyll a: Influences of Light and Periphyton Biomass. February 16, 2018. Matthew Kaylor, Alba Argerich, Seth White, Brian VerWey, and Ivan Arismendi.
• Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2017. April 1, 2018. Seth White, Casey Justice, Lauren Burns, Denise Kelsey, David Graves, and Matt Kaylor.

2017

• Are Recent Increases in Columbia Basin Natural-origin Steelhead Adult Return Abundance a Response to Restoration Actions?. March 3, 2017. Bill Bosch. Acknowledgments: David Fast, Chris Frederiksen, Jeffery Trammel, Doug Hatch, Gabe Temple, Tim Ressigue, Shannon Adams, Scott Nicolai, John Marvin, Kelly Clayton, Brandon Rogers, Steve Parker, and Alex Conley..
• Relative Reproductive Success of Supplemented Upper Yakima River Spring Chinook - Preliminary Report for Broodyear 2007. November 15, 2017. Peter Galbreath, Ilana Koch, Shawn Narum, Kenneth Warheit, Todd Seamons, Todd Kassler, David Fast, William Bosch, Mark Johnston, and Charles Strom.
• Habitat Characteristics and Fish Use of Cold-water Refuges in the Upper Grande Ronde River. April 1, 2017. Casey Justice, Dale McCullough, and Seth White.
• Columbia River Basin Steelhead Kelt Reconditioning Research. May 1, 2017. Andrew Pierce, Doug Hatch, David Fast, Scott Everett, Matt Abrahmse, James Nagler, Laura Jenkins, Lea Medeiros, Lucius Caldwell, Timothy Cavileer, Neil Graham, Ryan Branstetter, Joseph Blodgett, William Bosch, Chris Frederiksen, Noah Jackson, and Thomas Tall Bull.
• Post-spawning Life History Diversity in Reconditioned Female Clearwater River Steelhead Trout (Oncorhynchus mykiss) Kelts Assessed Using Plasma Estradiol-17β. June 1, 2017. Laura Jenkins, Andrew Pierce, Neil Graham, Lea Medeiros, Scott Everett, Douglas Hatch, and James Nagler.
• Deep Ancestry of Programmed Genome Rearrangement in Lampreys. June 30, 2017. Vladmir Timoshevskiy, Ralph Lampman, Jon Hess, Laurie Porter, and Jeramiah Smith.
• Sea-to-sea Survival of Late-run Adult Steelhead (Oncorhynchus mykiss) from the Columbia and Snake Rivers. May 1, 2017. Matthew Keefer, Michael Jepson, Tami Clabough, Eric Johnson, Shawn Narum, Jon Hess, and Christopher Caudill.
• Conservation Challenges and Research Needs for Pacific Lamprey in the Columbia River Basin. May 4, 2017. Benjamin Clemens, Richard Beamish, Kelly Coates, Margaret Docker, Jason Dunham, Ann Gray, Jon Hess, Jeffery Jolley, Ralph Lampman, Brian McIlraith, Mary Moser, Joshua Murauskas, David Noakes, Howard Schaller, Carl Schreck, Steven Starcevich, Bianca Streif, Stan van de Wetering, Joy Wade, Laurie Weitkamp, and Lance Wyss.
• Kelt Reconditioning: Giving Wild Steelhead a Boost in the Yakima Basin. January 1, 2017. Bill Bosch, Jeffery Trammell, and Doug Hatch.
• Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2015. May 31, 2017. Jeffrey K. Fryer, John Whiteaker, and Denise Kelsey.
• Behavioral Responses of Pacific Lamprey to Alarm Cues. June 1, 2017. Laurie Porter, Michael Hayes, Aaron Jackson, Brian Burke, Mary Moser, and R. Steven Wagner.
• Studies into Factors Limiting the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2015. May 15, 2017. Jeffrey K. Fryer, Denise Kelsey, Howie Wright, Skyeler Folks, Richard Bussanich, Kim D. Hyatt, and Margot M. Stockwell.
• Life History Diversity in Post-Spawn Female Steelhead Trout Assessed Using Plasma Estradiol-17β: Relationship with Growth and Energy Reserves. May 22, 2017. Laura Jenkins, Andrew Pierce, Neil Graham, Lea Medeiros, Ryan Branstetter, Scott Everett, Douglas Hatch, and James Nagler.
• Genomic Patterns of Diversity and Divergence of Two Introduced Salmonid Species in Patagonia, South America. April 1, 2017. Shawn Narum, Pablo Gallardo, Cristian Correa, Amanda Matala, Daniel Hasselman, Ben Sutherland, and Louis Bernatchez.
• Vive la Résistance: Genome-wide Selection Against Introduced Alleles in Invasive Hybrid Zones. October 25, 2016. Ryan Kovach, Brian Hand, Paul Hohenlohe, Ted Cosart, Matthew Boyer, Helen Neville, Clint Muhlfeld, Stephen Amish, Kellie Carim, Shawn Narum, Winsor Lowe, Fred Allendorf, and Gordon Luikart.
• Methods Supporting the Development of Food Web Metrics from Benthic Macroinvertebrate Data. May 17, 2017. Sean Sullivan and Seth White.
• Kelt Reconditioning and Reproductive Success Evaluation Research: 2016 Annual Technical Report. March 15, 2017. Doug Hatch,  Ryan Branstetter, Jeff Stephenson, Andrew Pierce, Jeremiah Newell, William Bosch, Scott Everett, Neil Graham, Lea Medeiros, Laura Jenkins, Thomas Tall Bull, Joy Goodwin, Nick Hoffman, Tim Cavileer, James Nagler, Micheal Fiander, Chris Frederickson, Joe Blodgett, David Fast, Robert Lessard, John Whiteaker, and Rebecca Johnson.
• Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2016. April 30, 2017. Dale McCullough, Seth White, Casey Justice, Lauren Burns, Denise Kelsey, and David Graves.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2015. March 1, 2017. Crystal Chulik, Agnes Strong, Jayson FiveCrows, Aaron Ikemoto, Amber Cate, Joe Nowinski, John Whiteaker, and Jeffrey Fryer.
• Sex Ratio and Maturation Characteristics of Adult Pacific Lamprey at Willamette Falls, Oregon. March 28, 2017. Laurie Porter, Peter Galbreath, Brian McIlraith, and Jon Hess.
• Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2015. March 31, 2016. Dale A. McCullough, Seth White, Casey Justice, Monica Blanchard, Robert Lessard, Denise Kelsey, David Graves, and Joe Nowinski.
• Legacies of Stream Channel Modification Revealed Using General Land Office Surveys, with Implications for Water Temperature and Aquatic Life. February 21, 2017. Seth White, Casey Justice, Denise Kelsey, Dale McCullough, and Tyanna Smith.
• Reconditioning Snake River B-Run Steelhead Kelts: A Research Report. December 1, 2016. Neil Graham, Laura Jenkins, Scott Everett, Ryan Branstetter, Andrew Pierce, and Doug Hatch.
• Using Genetic Pedigree Reconstruction to Estimate Effective Spawner Abundance from Redd Surveys: An Example Involving Pacific Lamprey Entosphenus tridentatus. January 25, 2017. Steven Whitlock, Luke Schultz, Carl Schreck, and Jon Hess.
• Can Stream and Riparian Restoration Offset Climate Change Impacts to Salmon Populations?. March 1, 2017. Casey Justice, Seth M. White, Dale A. McCullough, David S. Graves, and Monica R. Blanchard.
• Reproductive Development in Captive Reconditioned Female Steelhead Kelts: Evidence for Consecutive and Skip Spawning Life Histories. December 8, 2016. Andrew L. Pierce, Joseph W. Blodgett, Timothy D. Cavileer, Lea R. Medeiros, Josh Boyce, Lucius K. Caldwell, William J. Bosch, Ryan Branstetter, David E. Fast, Douglas R. Hatch, and James J. Nagler.

2016

• Evaluating Minijack Rates in Spring Chinook: Comparing Minijack Rates Based on Spring Plasma 11-ketotestosterone Levels with Rates Based on Fall Gonadosomatic Index. December 1, 2016. Lea Medeiros, Andrew Pierce, Curt Knudsen, Chad Stockton, Bill Bosch, and Peter Galbreath.
• Airborne Thermal Infrared Remote Sensing Upper Grande Ronde River Basin, Oregon. December 13, 2010. Watershed Sciences.
• LiDAR Data Collection Phase Grande Ronde River Basin. December 23, 2009. Watershed Sciences.
• Investigating Freshwater and Ocean Effects on Pacific Lamprey and Pacific Eulachon of the Columbia River Basin: Projections Within the Context of Climate Change. October 12, 2016. Rishi Sharma, David Graves, Anthony Farrell, and Nate Mantua.
• Genotyping-in-Thousands by Sequencing (GT-seq): A Low Cost, High-throughput, Targeted SNP Genotyping Method. July 1, 2016. Nathan R. Campbell, Stephanie A. Harmon, and Shawn R. Narum.
• Migrating Adult Steelhead Utilize a Thermal Refuge During Summer Periods with High Water Temperatures. August 9, 2016. Maureen A. Hess,  Jon E. Hess, Andrew P. Matala, Rod A. French, Craig A. Steele, Jen C. Lovtang, and Shawn R. Narum.
• Differential Adult Migration-timing and Stock-specific Abundance of Steelhead in Mixed Stock Assemblages. August 7, 2016.

  Jon E. Hess, Michael W. Ackerman, Jeffrey K. Fryer, Daniel J. Hasselman, Craig A. Steele, Jeff J. Stephenson, John M. Whiteaker, and Shawn R. Narum

  .
• Adaptive Genetic Variation Distinguishes Chilean Blue Mussels (Mytilus chilensis) from Different Marine Environments. June 1, 2016. Christian Araneda, Maria A. Larrain, Benhamin Hecht, and Shawn R. Narum.
• Climate Variables Explain Neutral and Adaptive Variation Within Salmonid Metapopulations: the Importance of Replication in Landscape Genetics. February 1, 2016.

  Brian K. Hand, Clint C. Muhlfeld, Alisa A. Wade, Ryan P. Kovach, Diane C. Whited, Shawn R. Narum, Andrew P. Matala, Michael W. Ackerman, Brittany A. Garner, John S. Kimball, Jack A. Stanford, and Gordon L. Luikart

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• Maximum Likelihood Estimation of the Proportion of Hatchery-origin Fish on Spawning Grounds Using Coded-wire and Parentage-based Tagging. May 1, 2016. Richard A. Hinrichsen, Craig A. Steele, Michael W. Ackerman, Matthew R. Campbell, Shawn R. Narum, Maureen A. Hess, William P. Young, Barbara A. Shields, and Brian L. Maschhoff.
• Evaluating Steelhead Kelt Treatments to Increase Iteroparous Spawners in the Yakima River Basin. July 15, 2016.

  Jeffrey L. J. Trammell, David E. Fast, Douglas R. Hatch, William J. Bosch, Ryan Branstetter, Andrew L. Pierce, Joseph W. Blodgett, and Chris R. Frederiksen

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• Physiological Comparisons of Steelhead Kelts Emigrating from the Situk River, AK and Clearwater River, ID. May 28, 2016. Zachary L. Penney, Christine M. Moffitt, Bryan Jones, and Brian Marston.
• Genetic Basis of Adult Migration Timing in Anadromous Steelhead Discovered Through Multivariate Association Testing. April 14, 2016. Jon E. Hess, Joseph S. Zendt, Amanda R. Matala, and Shawn R. Narum.
• Upper Grande Ronde River Basin Stream Temperature Model Expansion. October 1, 2012.

  Watershed Sciences, Inc.

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• Upper Grande Ronde River Basin Stream Temperature Modeling. March 29, 2012. Watershed Sciences, Inc..
• A Method for Characterizing Late-season Low-flow Regime in the Upper Grande Ronde River Basin, Oregon. April 16, 2016. Valerie J. Kelly and Seth M. White.
• Mapping Tributary Habitat Restoration Projects in the Upper Grande Ronde River to Support Landscape Analysis. January 31, 2015. Gregory N. Benge.
• Do We Need to Manage for Iteroparity in Steelhead Trout?. March 1, 2016. Zachary Penney.
• Wy-Kan-Ush-Mi Wa-Kish-Wit: How Indigenous Knowledge Has Shaped Modern Fisheries Management in the Columbia River. August 15, 2015. Zachary Penney, Paul Lumley, and Aja DeCoteau.
• Environmental Adaptation in Chinook Salmon (Oncorhynchus tshawytscha) Throughout Their North American Range. November 11, 2015. Benjamin Hecht, Andrew Matala, Jon Hess, and Shawn Narum.
• Kelt Reconditioning and Reproductive Success Evaluation Research: 2015 Annual Technical Report. March 1, 2016. Doug Hatch, Ryan Branstetter, Jeff Stephenson, Andrew Pierce, Andrew Matala, Robert Lessard, William Bosch, Scott Everett, Jeremiah Jewell, Neil Graham, Lea Medeiros, Laura Jenkins, Thomas Tall Bull, Maeghan Elliott, Katie Huggler, Tim Cavileer, James Nagler, Michael Fiander, Chris Frederickson, Joe Blodgett, David Fast,  John Whiteaker, and Rebecca Johnson.
• Riparian Vegetation Mapping in the Grande Ronde Watershed, Oregon: Monitoring and Validation of Spring Chinook Habitat Recovery and Population Viability. July 1, 2015. Aaron Wells, Rich Blaha, and Elizabeth Crowe.
• Genomics in Conservation: Case Studies and Bridging the Gap Between Data and Application. February 1, 2016. Brittany Garner, Brian Hand, Stephen Amish, Louis Bernatchez, Jeffrey Foster, Kristina Miller, Phillip Morin, Shawn Narum, Stephen O’Brien, Gretchen Roffler, William Templin, Paul Sunnucks, Jeffrey Strait, Kenneth Warheit, Todd Seamons, John Wenburg, Jeffrey Olsen, and Gordon Luikart.
• 2014 Annual Report: Genetic Assessment of Columbia River Stocks. March 1, 2016. Jon E. Hess, Nathan R. Campbell, Andrew P. Matala, Daniel J. Hasselman, and Shawn R. Narum.
• Chapter 21: Insights Gained Through Recent Technological Advancements for Conservation Genetics of Pacific Lamprey (Entosphenus tridentatus). January 1, 2016. Jon Hess.
• Movement Patterns of Artificially Reconditioned Kelt Steelhead Following Release in the Yakima River Basin. August 15, 2015. Ryan Branstetter, Jeremiah Newell, Chris Frederiksen, Jeff Trammel, Joe Blodgett, William Bosch, Bobby Begay, Neil Graham, Andrew Pierce, Jeff Stephenson, David Fast, and Doug Hatch.
• Genetic Basis of Adult Migration-timing within a Population of Steelhead (Oncorhynchus mykiss). August 15, 2015. Jon Hess, Joseph Zendt, Amanda Matala, and Shawn Narum.
• Seals and Sea Lions in the Columbia River: An Evaluation and Summary of Research. June 1, 2015. Deward Walker, Jr., Ph.D.
• The Use of Video to Monitor Columbia River Juvenile Salmonids at Bonneville and McNary Dams in 2011. January 1, 2012. Jeffery K. Fryer.
• Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2014. March 21, 2016. Jeffrey K. Fryer, Howie Wright, Skyeler Folks, Richard Bussanich, Kim Hyatt, Margot Stockwell, and Jennifer Miller.
• Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2014. March 21, 2016. Jeffrey K. Fryer, John Whiteaker, and Denise Kelsey.
• Differential Expression of Genes That Control Respiration Contribute to Thermal Adaptation in Redband Trout (Oncorhynchus mykiss gairdneri). May 4, 2015. Michael R. Garvin, Gary H. Thorgaard, and Shawn R. Narum.
• Monitoring Recovery Trends in Key Spring Chinook Habitat Variables and Validation of Population Viability Indicators: Annual Report 2009. March 31, 2009. Dale A. McCullough, Casey Justice, Seth White, Saang-Yoon Hyun, Rishi Sharma, Denise Kelsey, David Graves, Nicole Tursich, and Henry Franzoni.
• Monitoring Recovery Trends in Key Spring Chinook Habitat: Annual Report 2010. March 31, 2010. Dale A. McCullough, Casey Justice, Seth White, Rishi Sharma, Denise Kelsey, David Graves, Nicole Tursich, Robert Lessard, and Henry Franzoni.
• Monitoring Recovery Trends in Key Spring Chinook Habitat: Annual Report 2011. March 31, 2011. Dale A. McCullough, Casey Justice, Seth White, Rishi Sharma, Denise Kelsey, David Graves, Nicole Tursich, Laurinda Hill, Tarin Lewis, Robert Lessard, and Henry Franzoni.
• Monitoring Recovery Trends in Key Spring Chinook Habitat Variables and Validation of Population Viability Indicators: Annual Report 2012. March 31, 2013. Dale A. McCullough, Seth White, Casey Justice, Robert Lessard, and Laurinda Hill.
• Monitoring Recovery Trends in Key Spring Chinook Habitat Variables and Validation of Population Viability Indicators: Annual Report 2013. March 31, 2014. Dale A. McCullough, Seth White, Casey Justice, Robert Lessard, Laurinda Hill, Nicole Tursich, Denise Kelsey, David Graves, and Joe Nowinski.
• Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2014. March 31, 2015. Dale A. McCullough, Seth White, Casey Justice, Monica Blanchard, Robert Lessard, Denise Kelsey, David Graves, and Joe Nowinski.
• Hatchery Steelhead Kelt Reconditioning at Dworshak National Fish Hatchery: A Model for B Run Steelhead. August 17, 2015. Neil Graham, Scott Everett, Ryan Branstetter, Laura Jenkins, Andrew Pierce, and Doug Hatch.

2015

• Effects of Captive Reconditioning and Post-spawning Life History on Reproductive Performance in Female Steelhead (Oncorhynchus mykiss) Kelts. August 1, 2015. Laura Jenkins, Andrew Pierce, Scott Everett, Neil Graham, Lea Medeiros, Ryan Branstetter, Douglas Hatch, and James Nagler.
• Age And Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2014. April 27, 2015. Buck Jones, Crystal Chulik, Agnes Strong, Jayson FiveCrows, Joe Nowinski, John Whiteaker, and Jeffrey K. Fryer.
• 2013 Annual Report: Genetic Assessment of Columbia River Stocks. April 1, 2015. Jon E. Hess, Nathan R. Campbell, Andrew P. Matala, and Shawn R. Narum.
• Kelt Reconditioning and Reproductive Success Evaluation Research: 2014 Annual Technical Report. April 8, 2015. Doug Hatch, Ryan Branstetter, Jeff Stephenson, Andrew Pierce, Andrew Matala, Robert Lessard, William Bosch, Scott Everett, Jeremiah Newell, Neil Graham, Laura Jenkins, Maeghan Elliott, Lucius Caldwell, Tim Cavileer, James Nagler, Micheal Fiander, Chris Frederickson, Joe Blodgett, David Fast, John Whiteaker, and Rebecca Johnson.
• Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2013. March 31, 2015. Jeffrey K. Fryer, John Whiteaker, and Denise Kelsey.
• Selection for Upper Thermal Tolerance in Rainbow Trout (Oncorhynchus mykiss Walbaum). March 1, 2015. Zhongqi Chen, Michael Snow, Craig S. Lawrence, Anthony R. Church, Shawn R. Narum, Robert H. Devlin, and Anthony P. Farrell.
• Population Differentiation Determined from Putative Neutral and Divergent Adaptive Genetic Markers in Eulachon (Thaleichthys pacificus, Osmeridae), an Anadromous Pacific Smelt. March 1, 2015. John R. Candy, Nathan R. Campbell, Matthew H. Grinnell, Terry D. Beacham, Wesley A. Larson, and Shawn R. Narum.
• Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2013. March 1, 2015. Jeffrey K. Fryer, Howie Wright, Skyeler Folks, Richard Bussanich, Kim Hyatt, and Margot Stockwell.
• Transcriptomic Response to Heat Stress Among Ecologically Divergent Populations of Redband Trout. February 1, 2015. Shawn R Narum and Nathan R Campbell.
• Genetic Population Structure of Willamette River Steelhead and the Influence of Introduced Stocks. January 28, 2020. Donald M. Van Doornik, Maureen A. Hess, Marc A. Johnson, David J. Teel, Thomas A. Friesen, and James M. Myers.

2014

• Association Mapping of Disease Resistance Traits in Rainbow Trout Using Restriction Site Associated DNA Sequencing. December 1, 2014. Nathan R. Campbell, Scott E. LaPatra, Ken Overturf, Richard Towner, and Shawn R. Narum.
• Genotyping-in-thousands by Sequencing (GT-seq): A Cost Effective SNP Genotyping Method Based on Custom Amplicon Sequencing. December 1, 2014. Nathan R. Campbell, Stephanie A. Harmon, and Shawn R. Narum.
• Collection and Assessment of Emigrating Snake River Steelhead (Oncorhynchus mykiss) Kelts at Lower Granite Dam. September 3, 2014. Neil Graham, Scott Everett, Laura Jenkins, Andrew Pierce, and Doug Hatch.
• Comparison of DIDSON Versus Video Estimates of 2013 Spring Chinook and Steelhead Escapement to the Upper Basin of the Klickitat River. August 15, 2014. Peter Galbreath, Peter Barber and Chris Frederiksen.
• Genetic Parentage Analysis to Evaluate Reproductive Success of Spring Chinook Salmon (Oncorhynchus tshawytscha) in Newsome Creek, Idaho: 2013 Annual Report.. August 10, 2014. Andrew Matala, Shawn Narum, Justin Bretz, Thomas Backman, and Peter Galbreath.
• A ‘Behaviorscape’ Perspective on Stream Fish Ecology and Conservation: Linking Fish Behavior to Riverscapes. July 1, 2014. Seth M. White, Guillermo Giannico, and Hiram Li.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2013. June 18, 2014. Buck Jones, Crystal Chulik, Agnes Strong, Jayson FiveCrows, Joe Nowinski, John Whiteaker, and Jeffrey K. Fryer, Ph.D.
• A Genetic Analysis of the Summer Steelhead Stock Composition in the Columbia River and Snake River Tribal and Sport Fisheries from July 1, 2012 to March 31, 2013. June 1, 2014. Alan Byrne, Joe Hymer, Stuart Ellis, Roger Dick II, Ken Keller, Craig A. Steele, Jon E. Hess, Megan Begay, and Joseph D. Bumgarner.
• Relative Contributions of Neutral and Non-neutral Genetic Differentiation to Inform Conservation of Steelhead Trout Across Highly Variable Landscapes. June 1, 2014. Andrew P. Matala, Michael W. Ackerman, Matthew R. Campbell, and Shawn R. Narum.
• Genes Predict Long Distance Migration and Large Body Size in a Migratory Fish, Pacific Lamprey. June 1, 2014. Jon Hess, Christopher Cahttps://www.critfc.org/staff/brian-mcilraith/udill, Matthew Keefer, Brian McIlraith, Mary Moser, and Shawn Narum.
• Use of Genotyping by Sequencing Data to Develop a High-throughput and Multifunctional SNP Panel for Conservation Applications in Pacific Lamprey. June 1, 2014. Jon Hess , Nathan Campbell, Margaret Docker, Cyndi Baker, Aaron Jackson, Ralph Lampman, Brian McIlraith, Mary Moser, David Statler, William Young, Andrew Wildbill, and Shawn Narum.
• Identifying Stakeholder-relevant Climate Change Impacts: A Case Study in the Yakima River Basin, Washington, USA. May 1, 2014. Karen Jenni, David Graves, Jill Hardiman, Jim Hatten, Mark Mastin, Matt Mesa, Jessica Montag, Tim Nieman, Frank Voss, and Alec Maule.
• A Stakeholder Project to Model Water Temperature Under Future Climate Scenarios in the Satus and Toppenish Watersheds of the Yakima River Basin in Washington, USA. May 1, 2014. David Graves and Alec Maule.
• Watershed History Revealed Through Government Land Office Surveys: Detecting Change Over a Century of Land Use in the Columbia River Basin. May 17, 2014. Tyanna Smith, Seth White, Denise Kelsey, and Dale McCullough.
• 2012 Annual Report: Genetic Assessment of Columbia River Stocks. April 1, 2014. Jon E. Hess, Nathan R. Campbell, Andrew P. Matala, and Shawn R. Narum.
• Archival Genetic Analysis Suggests Recent Immigration Has Altered a Population of Chinook Salmon in an Unsupplemented Wilderness Area. April 1, 2014. Jon E. Hess and Andrew P. Matala.
• Climate Change and Indigenous Peoples in the United States: Impacts, Experiences and Actions. January 23, 2015. Maldonado, B. Colombi, and R. Pandya, Editors.
• Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2012. March 17, 2014. Jeffrey K. Fryer, John Whiteaker, and Denise Kelsey.
• Extirpation and Tribal Reintroduction of Coho Salmon to the Interior Columbia River Basin. February 26, 2014. Peter Galbreath, Michael Bisbee, Jr., Douglas Dompier, Cory Kamphaus, and Todd Newsome.
• Monitoring Stock-Specific Abundance, Run Timing, and Straying of Chinook Salmon in the Columbia River Using Genetic Stock Identification (GSI). February 10, 2014. Jon E. Hess , John M. Whiteaker , Jeffrey K. Fryer, and Shawn R. Narum.
• Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2012. January 15, 2014. Jeffrey K. Fryer, Howie Wright, Skyeler Folks, Richard Bussanich, Kim Hyatt, and Margot Stockwell.
• Testing for Delayed Mortality Effects in the Early Marine Life History of Columbia River Basin Yearling Chinook Salmon. January 27, 2014. Erin L. Rechisky, David W. Welch, Aswea D. Porter, Jon E. Hess, and Shawn R. Narum.
• Kelt Reconditioning and Reproductive Success Evaluation Research: 2013 Annual Technical Report. January 1, 2014. Doug Hatch, Ryan Branstetter, Jeff Stephenson, Andrew Pierce, Andrew Matala, John Whiteaker, Robert Lessard, L. Caldwell, Scott Everett, Bill Bosch, Ronda Dasher, Joe Blodgett, David Fast, Rebecca Johnson, Neil Graham, Laura Jenkins, Tim Cavileer, Kali Turner, James Nagler, Micheal Fiander, Chris Federickson, Jim Gidlery, Chris Brun, Bobby Begay, and Jeremiah Newell.

2013

• Analyses for Effect of Survey Week and Reach in Mark-recapture Studies of Metolius River Kokanee Oncorhynchus nerka. December 18, 2013. Peter Galbreath and Saang-Yoon Hyun.
• Climate Change Impacts on the Water Resources of American Indians and Alaska Natives in the U.S.. August 30, 2013. Cozzetto, K. Chief, K. Dittmer, M. Brubaker, R. Gough, K. Souza, F. Ettawageshik, S. Wotkyns, S. Opitz-Stapleton, S. Duren, P. Chavan.
• A Validation of Parentage-based Tagging Using Hatchery Steelhead in the Snake River Basin. June 24, 2013. Craig A. Steele, Eric C. Anderson, Michael W. Ackerman, Maureen A. Hess, Nathan R. Campbell, Shawn R. Narum, and Matthew R. Campbell.
• 2012 Spring Chinook Escapement to the Upper Basin of the Klickitat River Based on DIDSON Sonar Counts. June 19, 2013. Peter Galbreath, Peter Barber, and Chris Frederiksen.
• Thermal Adaptation and Acclimation of Ectotherms from Differing Aquatic Climates. June 1, 2013. Shawn R. Narum, Nathan R. Campbell, Kevin A. Meyer, Michael R. Miller and Ronald W. Hardy.
• Genotyping-by-sequencing in Ecological and Conservation Genomics. June 1, 2013. Shawn R. Narum, C. Alex Buerkle, John W. Davey, Michael R. Miller, and Paul A. Hohenlohe.
• Survival and Traits of Reconditioned Kelt Steelhead Oncorhynchus mykiss in the Yakima River, Washington. May 24, 2013. Douglas R. Hatch, David E. Fast, William J. Bosch, Joseph W. Blodgett, John M. Whiteaker, Ryan Branstetter, and Andrew L. Pierce.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2012. April 18, 2013. Joe Nowinski, Denise Kelsey, John Whiteaker, and Jeff Fryer.
• Changing Streamflow on Columbia Basin Tribal Lands—Climate Change and Salmon. April 17, 2013. Kyle Dittmer.
• Upstream Migration Timing of Columbia Basin Chinook Salmon, Sockeye Salmon, and Steelhead in 2011. March 31, 2013. Jeffrey K. Fryer, John M. Whiteaker, and Denise Kelsey.
• Discovery and Characterization of Novel Genetic Markers for use in the Management of Lahontan Cutthroat Trout (Oncorhynchus clarkii henshawi). March 1, 2013. Victoria L. Pritchard, Nathan R. Campbell, Shawn R. Narum, Mary M. Peacock, and John Carlos Garza.
• Divergent Life-history Races Do Not Represent Chinook Salmon Coast-wide: The Importance of Scale in Quaternary Biogeography. March 1, 2013. Paul Moran, David J. Teel, Michael A. Banks, Terry D. Beacham, M. Renee Bellinger, Scott M. Blankenship, John R. Candy, John Carlos Garza, Jon E. Hess, Shawn R. Narum, Lisa W. Seeb, William D. Templin, Colin G. Wallace, and Christian T. Smith.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2011. January 23, 2013. Joe Nowinski, Denise Kelsey, John Whiteaker, and Jeff Fryer.

2012

• Population Genomics of Pacific Lamprey: Adaptive Variation in a Highly Dispersive Species. December 3, 2012. Jon E. Hess, Nathan R. Campbell, Shawn R. Narum, David A. Close, and Margaret F. Docker.
• Supportive Breeding Boosts Natural Population Abundance with Minimal Negative Impacts on Fitness of a Wild Population of Chinook Salmon. November 1, 2012. Maureen A. Hess, Craig D. Rabe, Jason L. Vogel, Jeff J. Stephenson, Doug D. Nelson, and Shawn R. Narum.
• A Simulation of Water Temperature in the Upper Grande Ronde Basin with Future Climate Change Scenarios. October 25, 2012. David Graves.
• Population-specific Escapement of Columbia River Fall Chinook Salmon: Tradeoffs Among Estimation Techniques. October 1, 2012. Saang-Yoon Hyun, Matthew L. Keefer, Jeff K. Fryer, Michael A. Jepson, Rishi Sharma, Christopher C. Caudill, John M. Whiteaker, and George P. Naughton.
• Genome-wide Association Reveals Genetic Basis for the Propensity to Migrate in Wild Populations of Rainbow and Steelhead Trout. September 12, 2012. Benjamin C. Hecht, Nathan R. Campbell, Dean E. Holecek, and Shawn R. Narum.
• Development and Evaluation of 200 Novel SNP Assays for Population Genetic Studies of Westslope Cutthroat Trout and Genetic Identification of Related Taxa. September 1, 2012. Nathan R. Campbell, S.J. Amish, V.L. Pritchard, K.S. McKelvey, M.K. Young, M.K. Schwartz, J.C. Garza, G. Luikart, and Shawn R. Narum.
• Estimating Abundance and Life History Characteristics of Threatened Wild Snake River Steelhead Stocks by Using Genetic Stock Identification. August 16, 2012. Matthew R. Campbell, Christine C. Kozfkay, Timothy Copeland, William C. Schrader, Michael W. Ackerman and Shawn R. Narum.
• Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2011. August 10, 2012. Jeffrey K. Fryer, Howie Wright, Skyeler Folks, Kim Hyatt, and Margot Stockwell.
• Integrated Forecasts of Fall Chinook Salmon Returns to the Pacific Northwest. August 1, 2012. Saang-Yoon Hyun, Rishi Sharma, John K. Carlile, James G. Norris, Gayle Brown, Ryan Briscoe, and Diana Dobson.
• Steelhead Kelt Reconditioning and Reproductive Success: 2011 Annual Report. June 29, 2012. Doug Hatch, Ryan Branstetter, Jeff Stephenson, Andrew Pierce, John Whiteaker, and Bill Bosch.
• Linkages between Life History Type and Migration Pathways in Freshwater and Marine Environments for Chinook Salmon, Oncorhynchus tshawytscha. May 1, 2012. Rishi Sharma and Thomas Quinn.
• Influences of Hatchery Supplementation, Spawner Distribution, and Habitat on Genetic Structure of Chinook Salmon in the South Fork Salmon River, Idaho. April 25, 2012. Andrew P. Matala, Shawn R. Narum, William Young and Jason L. Vogel.
• Genetic Evaluation of Steelhead Trout (Oncorhynchus mykiss) in the Rock Creek Watershed of the Middle Columbia River Basin. April 14, 2012. Andrew P. Matala.
• Relating Spatial and Temporal Scales of Climate and Ocean Variability to Survival of Pacific Northwest Chinook Salmon (Oncorhynchus tshawytscha). September 26, 2012. Rishi Sharma, Luis A. Velez-Espino, ALex C. Wertheimer, Nathan Mantua, and Robert C. Francis.
• 2011 Annual Report: Genetic Assessment of Columbia River Stocks. March 31, 2012. Jon E. Hess, Nathan R. Campbell, Andrew P. Matala, and Shawn R. Narum.
• Upstream Migration Timing of Columbia Basin Chinook Salmon, and Sockeye Salmon and Steelhead in 2010. March 31, 2012. Jeffrey K. Fryer, John M. Whiteaker, and Denise Kelsey.
• 2011 Spring Chinook Escapement to the Upper Basin of the Klickitat River Based on DIDSON Sonar Counts. February 17, 2012. Peter Galbreath, Peter Barber, and Chris Fredericksen.

2011

• Accounting for Tag Loss and Its Uncertainty in a Mark–recapture Study with a Mixture of Single and Double Tags. December 27, 2011. Saang-Yoon Hyun, Joel Reynolds, and Peter Galbreath.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2010. December 16, 2011. Denise Kelsey, Holly Ballantyne, John Whiteaker, and Jeffrey K. Fryer.
• Sea Lion Monitoring and Non-lethal Hazing. December 15, 2011. Doug Hatch and John Whiteaker.
• Estimating Critical Abundance Thresholds in Exploited Populations: A Simulation Approach Based on Species Resilience to Disturbance. December 1, 2011. Rishi Sharma and Scott W. Raborn.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2009. November 16, 2011. Denise Kelsey, Holly Ballantyne, John Whiteaker, and Jeffrey K. Fryer.
• Introgressive Hybridization Among Major Columbia River Chinook Salmon (Oncorhynchus tshawytscha) Lineages Within the Klickitat River Due to Hatchery Practices. November 1, 2011. Jon E. Hess, Andrew P. Matala, Joseph S. Zendt, and Chris R. Frederiksen.
• Genetic Stock Structure, Relative Productivity and Migration (Gene Flow) of White Sturgeon Among Bonneville, The Dalles, John Day and McNary Reservoirs in the Lower Mid-Columbia River Region. October 31, 2011. Andrew P. Matala and Blaine Parker.
• Upstream Migration Timing of Columbia Basin Chinook, Sockeye Salmon and Steelhead in 2009. October 7, 2011. Jeffrey K. Fryer, Jacinda Mainord, John Whiteaker, and Denise Kelsey.
• Precision and Accuracy of Estimators of the Proportion of Hatchery-origin Spawners. August 19, 2011. Richard A. Hinrichsen, Rishi Sharma, and Timothy R. Fisher.
• The Impact on Coldwater-fish Populations of Interpretative Differences in the Application of the United States Clean Water Act 1972 by Individual State Legislatures. August 1, 2011. Dale A. McCullough.
• Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2010. June 30, 2011. Jeffrey K. Fryer, Howie Wright, Skyeler Folks, and Kim Hyatt.
• Steelhead Kelt Reconditioning and Reproductive Success 2010 Annual Report. June 29, 2011. Doug Hatch, Ryan Branstetter, Jeff Stephenson, Andrew Pierce, Bill Bosch, David Fast, Joe Blodgett, Scott Everett, Rhonda Dasher, Cyndi Baker, Christine Moffitt, and James Nagler.
• Introduction to a Special Section: Genetic Adaptation of Natural Salmonid Populations. June 17, 2011. David J. Teel, Shawn R. Narum, Jeffrey B. Olsen, and Fred M. Utter.
• Candidate Genetic Markers Associated with Anadromy in Oncorhynchus mykiss of the Klickitat River. June 17, 2011. Shawn R. Narum, Joseph S. Zendt, Chris Frederiksen, Nate Campbell, Andrew Matala, and William R. Sharp.
• Relative Genetic Diversity Estimates Among Four Pacific Salmonids. June 17, 2011. Nathan R. Campbell and Shawn R. Narum.
• Major Lineages and Metapopulations in Columbia River Oncorhynchus mykiss are Structured by Dynamic Landscape Features and Environments. June 17, 2011. Scott M. Blankenship, Matt R. Campbell, Jon E. Hess, Maureen A. Hess, Todd W. Kassler, Christine C. Kozfkay, Andrew P. Matala, Shawn R. Narum, Melanie M. Paquin, Maureen P. Small, Jeff J. Stephenson, Kenneth I. Warheit and Paul Moran.
• Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam: 2010 Annual Progress Report. June 17, 2011. Mike Ackerman, Jesse McCane, Craig Steele, Matt Campbell, Andrew Matala, Jon Hess, and Shawn Narum.
• Resolving Adaptive and Demographic Divergence Among Chinook Salmon Populations in the Columbia River Basin. June 17, 2011. Andrew P. Matala, Shawn R. Narum, and Jon E. Hess.
• A Computer Program for Calculating the Distance Between Sites in the Columbia River Basin. June 10, 2011. David Graves.
• Single-Nucleotide Polymorphism (SNP) Loci Correlated with Run Timing in Adult Chinook Salmon from the Columbia River Basin. June 1, 2011. Jon E. Hess and Shawn R. Narum.
• Climate Change, Salmon and Steelhead, and the Columbia River Tribes. May 27, 2011. David Graves, Laura Gephart, and Kyle Dittmer.
• A Review of Genetic Evaluation Tools for Conservation and Management of North American Sturgeons: Roles, Benefits, and Limitations. May 7, 2011. Paul. J. Anders, Andrea Drauch-Schreier, Jeff Rodzen, Madison S. Powell, Shawn Narum, and James A. Crossman.
• 2010 Annual Report: Genetic Assessment of Columbia River Stocks. March 31, 2011. Jon E. Hess, Nathan R. Campbell, Andrew P. Matala, and Shawn R. Narum.
• Development of 54 Novel Single-nucleotide Polymorphism (SNP) Assays for Sockeye and Coho Salmon and Assessment of Available SNPs to Differentiate Stocks Within the Columbia River. February 17, 2011. Nathan R. Campbell and Shawn R. Narum.
• Comparison of FST Outlier Tests for SNP Loci Under Selection. February 6, 2011. Shawn R. Narum and Jon E. Hess.
• 2010 Spring Chinook Escapement to the Upper Basin of the Klickitat River Based on DIDSON Sonar Counts. January 10, 2011. Peter Galbreath, Peter Barber, Chris Frederiksen, and Robert Lessard.
• Comparison of SNPs and Microsatellites for Fine-scale Application of Genetic Stock Identification of Chinook Salmon in the Columbia River Basin. January 10, 2011. Jon E. Hess, Andrew P. Matala, and Shawn R. Narum.
• Using Hierarchical Models to Estimate Effects of Ocean Anomalies on North-west Pacific Chinook Salmon Oncorhynchus tshawytscha Recruitment. January 1, 2011. Rishi Sharma and Marin Liermann.

2010

• Are Coldwater Fish Populations of the United States Actually Being Protected by Temperature Standards?. December 1, 2010. Dale A. McCullough.
• Studies into Factors Limiting the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2009. October 15, 2010. Jeffrey K. Fryer, Jacinda Mainord, Howie Wright, Skyeler Folks, and Kim Hyatt.
• Adaptation of Redband Trout in Desert and Montane Environments. September 30, 2010. Shawn R. Narum, Nathan R. Campbell, Christine C. Kozfkay, and Kevin A. Meyer.
• Examining Genetic Lineages of Chinook Salmon in the Columbia River Basin. September 22, 2010. Shawn R. Narum, Jon E. Hess, and Andrew P. Matala.
• Sequence Divergence of Heat Shock Genes Within and Among 3 Oncorhynchids. September 22, 2010. Shawn R. Narum and Nathan R. Campbell.
• Observations of Fish Behavior Recorded by a DIDSON Sonar Concurrent with Blasting Events During Renovation of the Lyle Falls Fish Ladder. September 1, 2010. Peter Galbreath, Shane Keep, Joseph Zendt, and Chris Frederiksen.
• 2009 Annual Report: Steelhead Kelt Reconditioning and Reproductive Success. June 29, 2010. Ryan Branstetter, Jeff Stephenson, Andrew Pierce, Douglas R. Hatch.
• Relationships between Growth and Disease Resistance in Rainbow Trout, Oncorhynchus mykiss (Walbaum). April 1, 2010. Ken Overturf, S. LaPatra, R. Towner, N. Campbell, and S. Narum.
• 2009 Spring Chinook Escapement to the Upper Basin of the Klickitat River Based on DIDSON Sonar Counts. March 1, 2010. Peter Galbreath, Chris Fredericksen, Peter Barber, and Saang-Yoon Hyun.
• 2009 Annual Report: Genetic Assessment of Columbia River Stocks. February 16, 2010. Shawn R. Narum, Nathan R. Campbell, Andrew P. Matala, and Jon E. Hess.
• High-Throughput SNP Genotyping in Salmon and Steelhead. January 1, 2010. Shawn R. Narum, Nathan R. Campbell, and Yong Yi.

2009

• Field Report: 2009 Pinniped Management Activities at and Below Bonneville Dam. December 10, 2009. Robin Brown, Steve Jefferies, Doug Hatch, Bryan Wright, Sandra Jonker, and John Whiteaker.
• An Evaluation of CRITFC-Coordinated Habitat Restoration Projects and Limiting Factors to Salmon and Steelhead in the Columbia Basin. December 1, 2009. David Graves.
• A Field Study to Investigate Repeat Homing in Pacific Lampreys. December 1, 2009. Douglas R. Hatch and John Whiteaker.
• Identification and Characterization of Heat Shock Response Related Single Nucleotide Polymorphisms in O. mykiss and O. tshawytscha - in Permanent Genetic Resources Added to Molecular Ecology Resources Database 1 May 2009–31 July 2009. November 1, 2009. Nathan Campbell and Shawn Narum, and many others, see article.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2008. May 15, 2009. Charles Torbek, Jacinda Mainord, John Whiteaker,  and Jeffrey K. Fryer.
• Estimation of Mid-Columbia Summer Chinook Salmon Escapement and Age Composition Using PIT Tags in 2008. May 11, 2009. Jeffrey K. Fryer.
• Ocean Harvest Real-Time Forecasts of Fall Chinook Salmon (Oncorhynchus tshawytscha) Returns to the Columbia River. April 24, 2009. Saang-Yoon Hyun and Rishi Sharma.
• The Use of Generalized Additive Models for Forecasting the Abundance of Queets River Coho Salmon. April 20, 2009. Shizen Wang, Gary Morishima, Rishi Sharma, and Larry Gilbertson.
• Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 1998. March 31, 2009. Rian C. Hooff, Amy Ritchie, and John Netto.
• Water Supply Forecast Correction Curves. February 1, 2009. Kyle Dittmer.
• Use of PIT Tags to Determine Upstream Migratory Timing and Survival of Columbia Basin Sockeye Salmon in 2008. January 31, 2009. Jeffrey K. Fryer.
• Research in Thermal Biology: Burning Questions for Coldwater Stream Fishes. January 1, 2009. Dale A. McCullough, John M. Bartholow, Henriette I. Jager, Robert L. Beschta, Edward F. Cheslak, Michael L. Deas, Joseph L. Ebersole, J. Scott Foott, Sherri L. Johnson, Keith R. Marine, Matthew G. Mesa, James H. Petersen, Yves Souchon, Kenneth F. Tiffan, and Wayne A. Wurtsbaugh.
• Survival, Maturation, Ocean Distribution and Recruitment of Pacific Northwest Chinook Salmon (Oncorhynchus tshawytscha) in Relation to Environmental Factors, and Implications for Management. January 1, 2009. Rishi Sharma.
• Characterization of 22 Novel Single Nucleotide Polymorphism Markers in Steelhead and Rainbow Trout. January 1, 2009. Nathan R. Campbell, Ken Overturf, and Shawn R. Narum.

2008

• Stream Trees: A Statistical Method for Mapping Genetic Differences Between Populations of Freshwater Organisms to the Sections of Streams that Connect Them. December 6, 2008. Steven T. Kalinowski, Michael H. Meeuwig, Shawn R. Narum, and Mark L. Taper.
• Localized Genetic Structure Persists in Wild Populations of Chinook Salmon in the John Day River Despite Gene Flow from Outside Sources. November 20, 2008. Shawn R. Narum, Terra L. Schultz, Donald M. Van Doornik, and David Teel.
• A Centralized Model for Creating Shared, Standardized, Microsatellite Data that Simplifies Inter-laboratory Collaboration. October 22, 2008. Jeff Stephenson, Matt R Campbell, Jon E Hess, Chris Kozfkay, Andrew P Matala, Megan V McPhee, Paul Moran, Shawn R Narum, Melanie M Paquin, Ora Schlei, Maureen P Small, Donald M Van Doornik, and John K Wenburg.
• Field Report: 2008 Pinniped Management Activities at Bonneville Dam. September 23, 2008. Robin Brown, Steve Jefferies, Douglas R. Hatch, and Bryan Wright.
• Quantitative PCR Assessment of Microsatellite and SNP Genotyping with Variable Quality DNA Extracts. August 23, 2008. Nathan R. Campbell and Shawn R. Narum.
• Procedures for Estimating Tag Loss Rate and Spawning Escapement in a Mark-recapture Study of Metolius River Kokanee Oncorhynchus nerka. August 4, 2008. Peter Galbreath and Saang-Yoon Hyun.
• A GIS Analysis of Climate Change and Snowpack on Columbia Basin Tribal Lands. May 27, 2008. David Graves.
• 2007 Annual Report: Steelhead Kelt Reconditioning and Reproductive Success. May 12, 2008. Ryan Branstetter, Jeff Stephenson, Douglas R. Hatch, John Whiteaker, and Saang-Yoon Hyun.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2007. April 3, 2008. John Whiteaker and Jeffrey K. Fryer.
• Estimation of Mid-Columbia Summer Chinook Salmon Escapement and Age Composition Using PIT Tags in 2007. January 15, 2008. Jeffrey K. Fryer.
• Identification of Novel Single-nucleotide Polymorphisms in Chinook Salmon and Variation Among Life History Types. January 14, 2008. Nathan R. Campbell and Shawn R. Narum.
• Use of PIT tags to Determine Upstream Migratory Timing and Survival of Columbia Basin Sockeye Salmon in 2007. January 31, 2008. Jeffrey K. Fryer.
• Differentiating Salmon Populations at Broad and Fine Geographical Scales with Microsatellites and Single Nucleotide Polymorphisms. January 1, 2008. Shawn R. Narum, M. Banks, T.D. Beacham, M.R. Bellinger, M.R. Campbell, S.J. Dekoning, A. Elz, C.M. Guthrie III, C. Kozfkay, K.M. Miller, Paul Moran, R. Phillips, L.W. Seeb, C.T. Smith, K. Warheirt, S.F. Young, and J.C. Garza.
• Influence of Landscape on Resident and Anadromous Life History Types of Oncorhynchus mykiss. January 1, 2008. Shawn R. Narum, Joseph S. Zendt, David Graves, and William R. Sharp.

2007

• Impacts of Marker Class Bias Relative to Locus-specific Variability on Population Inferences in Chinook Salmon: A Comparison of Single-nucleotide Polymorphisms with Short Tandem Repeats and Allozymes. November 29, 2007. Christian T. Smith, Anton Antonovich, William D. Templin, Carita M. Elfstrom, Shawn R. Narum, and Lisa W. Seeb.
• Development of a Standardized DNA Database for Chinook Salmon. November 1, 2007. LW Seeb, A Antonovich, Michael A Banks, TD Beacham, MR Bellinger, SM Blankenship, MR Campbell, NA Decovich, JC Garza, CM Guthrie III, TA Lundrigan, P Moran, SR Narum, JJ Stephenson, KJ Supernault, DJ Teel, WD Templin, JK Wenburg, SF Young, and CT Smith.
• Bayesian Decision Analysis for Status of Snake River Spring-Summer Chinook Salmon Oncorhynchus tshawytscha Populations at Extinction Risk. July 31, 2007. Saang-Yoon Hyun and Rishi Sharma.
• Iteroparity in Complex Mating Systems of Steelhead Oncorhynchus mykiss (Walbaum). July 9, 2007. Shawn R. Narum, Doug Hatch, Andrew Talbot, Paul Moran, and Madison Powell.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2006. March 12, 2007. John Whiteaker and Jeffrey K. Fryer.
• An Evaluation of the Reproductive Success of Natural-origin, Hatchery-origin and Kelt Steelhead in the Columbia Basin: Annual Report 2006. March 1, 2007. Jeff Stephenson, Douglas R. Hatch, Ryan Branstetter, John Whiteaker, Shawn Narum, David Fast, Joe Blodgett, Bill Bosch, Mark Johnston, Todd Newsome, David Lind, Brandon Rogers, Chris Fisher, Rhonda Dasher, Devin Best, Jens Lovtang, and Micheal Gauvin..
• Identification of Columbia Basin Sockeye Salmon Stocks in 2006. February 27, 2007. Jeffrey K. Fryer.
• Estimation of Mid-Columbia Summer Chinook Salmon Escapement and Age Composition using PIT tags in 2006. February 24, 2007. Jeffrey K. Fryer.
• Use of PIT Tags to Determine Upstream Migratory Timing and Survival of Columbia Basin Sockeye Salmon in 2006. February 21, 2007. Jeffrey K. Fryer.
• Genetic Stock Identification of Chinook Salmon Mixtures at Bonneville Dam. Final Report to the Pacific Salmon Commission.. January 31, 2007. Shawn Narum, Doug Hatch, and John Whiteaker.
• Reproductive Isolation Following Reintroduction of Chinook Salmon with Alternative Life Histories. January 13, 2007. Shawn R. Narum, William D. Arnsberg, Andre J. Talbot, and Madison S. Powell.
• Genetic Variation and Structure of Chinook Salmon Life History Types in the Snake River. January 1, 2007. Shawn R. Narum, Jeff Stephenson, and Matthew R. Campbell.
• Year-to-year Variability in Ocean Recovery Rate of Columbia River Upriver Bright Fall Chinook Salmon (Oncorhynchus tshawytscha). January 1, 2007. Saang-Yoon Hyun, Katherine W. Myers, and Andre Talbot.

2006

• Kelt Reconditioning: A Research Project to Enhance Iteroparity in Columbia Basin Steelhead (Oncorhynchus mykiss) - 2006 Annual Report. December 1, 2006. Ryan Branstetter, John Whiteaker, Douglas R. Hatch, Saan-Yoon Hyun, Joe Blodgett, Bill Bosch, David Fast, and Todd Newsome.
• Kelt Reconditioning: A Research Project to Enhance Iteroparity in Columbia Basin Steelhead (Oncorhynchus mykiss) - 2005 Annual Report. December 1, 2006. Ryan Branstetter, John Whiteaker, Doug Hatch, Joe Blodgett, William Bosch, David Fast, and Todd Newsome.
• Summer Chinook Juvenile Sampling and Adult Monitoring in the Mid-Columbia. October 24, 2006. Peter Galbreath, Peter Barber, Shawn Narum, Dani Evenson, and Saang-Yoon Hyun.
• Beyond Bonferroni: Less Conservative Analyses for Conservation Genetics. October 1, 2006. Shawn R. Narum.
• Monitoring Fine Sediment: Grande Ronde and John Day Rivers, 2004 Final Report. September 1, 2006. Dale A. McCullough and M. Jonas Greene.
• Preseason Forecasts of Ocean Escapements of Columbia River Chinook salmon (Oncorhynchus tshawytscha). June 30, 2006. Saang-Yoon Hyun, Stuart Ellis, and Phil Roger.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2005. April 6, 2006. John Whiteaker, Jeffrey K. Fryer, and Jeremiah Doyle.
• Identification of Columbia Basin Sockeye Salmon Stocks in 2005. April 5, 2006. Jeffrey K. Fryer.
• Altered Flood Control, Climate Change, and Rebuilding Pacific Northwest Salmon Stocks. March 24, 2006. Kyle Dittmer.
• 2005 Annual Report: An Evaluation of the Reproductive Success of Natural-origin, Hatchery-origin, and Kelt Steelhead in the Columbia Basin. March 16, 2006. Douglas R. Hatch, Ryan Branstetter, Jeff Stephenson, John Whiteaker, Shawn Narum, David Fast, Joe Blodgett, Bill Bosch, Todd Newsome, David Lind, Brandon Rogers, Chris Fisher, Rhonda Dasher, Devin Best, Jens Lovtang, and Madison Powell.
• Microsatellites Reveal Population Substructure of Klickitat River Native Steelhead and Genetic Divergence from an Introduced Stock. January 18, 2006. Shawn R. Narum, Madison S. Powell, Rolf Evenson, Bill Sharp, and Andre J. Talbot.
• An Evaluation of the Clearwater River Supplementation Program in Western Washington. January 18, 2006. Rishi Sharma, Gary Morishima, Shizhen Wang, Andre Talbot, and Larry Gilbertson.
• Small-Scale Genetic Structure and Variation in Steelhead of the Grande Ronde River, Oregon, USA. January 1, 2006. Shawn R. Narum, Steve Boe, Paul Moran, and Matt Powell.
• 2004-2006 US LOA Chinook Draft Report: Fixes or Alternatives to the Individual Stock Based Management (ISBM) Provisions. January 1, 2006. Rishi Sharma.

2005

• Validation of a Long-range Dual Frequency Identification Sonar (DIDSON-LR) for Fish Passage Enumeration in the Methow River. November 1, 2005. Peter Galbreath and Peter Barber.
• Identification of Columbia Basin Sockeye Salmon Stocks in 2004. April 8, 2005. Jeffrey K. Fryer.
• Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2004. March 31, 2005. Donette P. Miranda, John Whiteaker, and Jeffrey K. Fryer.
• Using Simulation Techniques to Estimate Management Parameters on Snake River Steelhead: Declines in Productivity Make Rebuilding Difficult. March 17, 2005. Henry Yuen and Rishi Sharma.
• A Statistical Model for In-season Forecasts of Sockeye Salmon (Oncorhynchus nerka) Returns to the Bristol Bay Districts of Alaska. January 1, 2005. Saang-Yoon Hyun, Ray Hillborn, James J. Anderson, and Yakama Nation Fisheries.
• Documenting the Existing Individual Stock Based Management (ISBM) Provision of the Chinook Chapter of the Pacific Salmon Treaty: Data, Methods, User Guide and Limitations. January 1, 2005. Rishi Sharma.
• A Quantitative Framework for the Analysis of Habitat and Hatchery Practices on Pacific Salmon. January 1, 2005. Rishi Sharma, Andrew B. Cooper, and Ray Hilborn.

2004

• Kelt Reconditioning: A Research Project to Enhance Iteroparity in Columbia Basin Steelhead (Oncorhynchus mykiss) - 2004 Annual Report. November 1, 2004. Douglas R. Hatch, Ryan Branstetter, John Whiteaker, Joe Blodgett, Bill Bosch, David Fast, and Todd Newsome.
• Genetic Divergence of Sympatric Resident and Anadromous Forms of Oncorhynchus mykiss in the Walla Walla River, U.S.A.. August 1, 2004. Shawn R. Narum, C. Contor, Andre Talbot, and M. S. Powell.
• A Distinctive Microsatellite Locus That Differentiates Ocean-type from Stream-type Chinook Salmon in the Interior Columbia River Basin. July 1, 2004. Shawn R. Narum, Madison S. Powell, and Andre J. Talbot.
• Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 2003. March 31, 2004. Donette P. Miranda, John Whiteaker, and Jeffrey K. Fryer.
• Identification of Columbia Basin Sockeye Salmon Stocks in 2003. March 18, 2004. Jeffrey K. Fryer.
• Three Genetic Stocks of Upriver Bright Fall Chinook Salmon Detected in the Columbia River Basin, USA. January 1, 2004. Shawn R. Narum, Andre Talbot, Douglas R. Hatch, John Whiteaker, and Matt Powell.

2003

• Evaluate Steelhead (Oncorhynchus mykiss) Kelt Outmigration from Lower Granite Dam to Bonneville Dam and Test the Use of Transportation to Increase Returns of Repeat Spawners. October 9, 2003. Douglas R. Hatch, Ryan Branstetter, and Shawn R. Narum.
• Kelt Reconditioning: A Research Project to Enhance Iteroparity in Columbia Basin Steelhead (Oncorhynchus mykiss) - 2002 Annual Report. July 9, 2003. Douglas R. Hatch, Ryan Branstetter, Joe Blodgett, Bill Bosch, David Fast, and Todd Newsome.
• Development of a Stock Assessment and Research Plan for Mid-Columbia Summer Chinook Salmon. May 1, 2003. Danielle F. Evenson and Andre J. Talbot.
• Tribal Energy Vision. May 1, 2003. Tom Foley and Rob Lothrop.
• Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 2002. April 20, 2003. Jeffrey K. Fryer and Denise A. Kelsey.
• Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 2002. March 20, 2003. Denise A. Kelsey and Jeffrey K. Fryer.
• Beliefs, Values, and Technical Assessment in Environmental Management: Contaminated Sediments in Puget Sound. January 1, 2003. Thomas M. Leschine, Kent A. Lind, and Rishi Sharma.

2002

• Hatchery Contribution to a Natural Population of Chinook in the Hanford Reach of the Columbia River, Washington. August 1, 2002. Danielle F. Evenson, Douglas R. Hatch, and Andre J. Talbot.
• Multiple Lines of Evidence for Determining Upper Optimal Temperature Thresholds for Bull Trout. June 27, 2002. Dale A. McCullough and Shelley Spalding.
• Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 2001. March 30, 2002. Jeffrey K. Fryer and Denise A. Kelsey.

2001

• Quantitative Methods of Developing Escapement Goals in the Columbia River Basin: A Scientific Perspective. November 27, 2001. Andre Talbot.
• Empirical Relationships Between Watershed Characteristics and Coho Salmon (Oncorhynchus kisutch) Smolt Abundance in 14 Western Washington Streams. June 21, 2001. Rishi Sharma and Ray Hilborn.
• Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 2000. May 30, 2001. Jeffrey K. Fryer and Denise A. Kelsey.
• Summary of Technical Literature Examining the Physiological Effects of Temperature on Salmonids. May 1, 2001. Dale A. McCullough, Shelley Spalding, Debra Sturdevant, and Mark Hicks.
• Proceedings from the Columbia River Basin Tribal Water Quality Conference. May 1, 2001. Columbia River Inter-Tribal Fish Commission.
• Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 2001. January 31, 2002. Denise A. Kelsey and Jeffrey K. Fryer.
• Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 2000. February 9, 2001. Denise A. Kelsey and Jeffrey K. Fryer.

2000

• Monitoring Fine Sediment: Grande Ronde and John Day Rivers Annual Report for 1999. January 1, 2000. Jonathan J. Rhodes, Jonas M. Greene, and Michael D. Purse.

1999

• Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 1999. December 14, 1999. Rian C. Hooff, Amy Ritchie, Jeffrey K. Fryer, and John Whiteaker.
• Cumulative Impacts on the Peoples of the Nez Perce, Yakama, Umatilla, and Warm Springs Indian Reservations from Construction and Operation of US Army Corps of Engineers’ Dams in the Columbia River Basin Upstream of Bonneville Dam, Inclusive. March 31, 1999. Roy E. Beaty, Henry J. Yuen, Philip A. Meyer, and Michael A. Matylewich.
• Monitoring of Streambank Stability and Streamside Vegetation in a Livestock Exclosure on the Warm Springs River, Oregon: Comparison of Ground-Based Surveys with Aerial Photographic Analysis. March 16, 1999. Dale A. McCullough.
• A Review and Synthesis of Effects of Alterations to the Water Temperature Regime on Freshwater Life Stages of Salmonids, with Special Reference to Chinook Salmon. February 22, 1999. Dale A. McCullough.

1997

• Framework for Estimating Salmon Survival as a Function of Habitat Condition. August 19, 1997. Michael L. Cuenco and Dale A. McCullough.

1996

• Changes in Size and Age at Maturity of Columbia River Upriver Bright Fall Chinook Salmon (Oncorhynchus tshawytscha): Implications for Stock Fitness, Commercial Value, and Management. August 30, 1996. Roy E. Beaty.
• Evaluation of Deschutes River Fall Chinook Salmon. July 1, 1996. Roy E. Beaty.
• A Monitoring Strategy for Application to Salmon-Bearing Watersheds. June 4, 1996. Dale A. McCullough and F. A. Espinosa, Jr..

1995

• A Comparison and Evaluation of Existing Land Management Plans Affecting Spawning and Rearing Habitat of Snake River Basin Salmon Species Listed Under the Endangered Species Act. September 1, 1995. Jonathan J. Rhodes.
• Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1994. March 30, 1995. Douglas R. Hatch, David R. Pederson, Jeffery K. Fryer, and Matthew Schwartzberg.
• Age and Length Composition of Columbia Basin Spring and Summer Chinook Salmon at Bonneville Dam in 1994. April 3, 1995. Jeffrey K. Fryer, David R. Pederson, and Matthew Schwartzberg.

1994

• A Coarse Screening Process for Evaluation of the Effects of Land Management Activities on Salmon Spawning and Rearing Habitat in ESA Consultations. December 1, 1994. Jonathan J. Rhodes, Dale A. McCullough, F. A. Espinosa, Jr..
• A Fish Consumption Survey of the Umatilla, Nez Perce, Yakama, and Warm Springs Tribes of the Columbia River Basin. October 1, 1994. The Columbia River Inter-Tribal Fish Commission.
• Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 1993. July 1, 1994. Jeffrey K. Fryer and Matthew Schwartzberg.
• Age and Length Composition of Columbia Basin Spring and Summer Chinook Salmon at Bonneville Dam in 1993. February 21, 1994. Jeffrey K. Fryer and Matthew Schwartzberg.

1993

• Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1992. March 26, 1993. Douglas R. Hatch, Andrew Wand, and Matthew Schwartzberg.
• Identifying Hatchery and Naturally Spawning Stocks of Columbia Basin Summer Chinook Salmon Using Scale Pattern Analyses in 1990. February 22, 1993. Jeffrey K. Fryer and Matthew Schwartzberg.
• Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 1992. February 22, 1993. Jeff Fryer and Matthew Schwartzberg.
• Age and Length Composition of Columbia Basin Spring and Summer Chinook Salmon at Bonneville Dam in 1992. February 22, 1993. Jeff Fryer and Matthew Schwartzberg.
• 1992 Columbia River Fish Runs and Fisheries. January 4, 1993. Paul Lumley, Robert McClure, Mike Matylewich.

1992

• Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1991. March 12, 1992. Douglas R. Hatch, Andrew Wand, and Matthew Schwartzberg.
• Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analysis in 1991. February 11, 1992. Jeff Fryer, Carolyn Pearson, and Matthew Schwartzberg.
• Age and Length Composition of Columbia Basin Summer Chinook Salmon at Bonneville Dam in 1991. February 19, 1992. Jeff Fryer and Matthew Schwartzberg.
• Age and Length Composition of the Columbia Basin Spring Chinook Salmon Sampled at Bonneville Dam in 1991. February 11, 1992. Matthew Schwartzberg and Jeff Fryer.

1991

• Age and Length Composition of the Columbia Basin Summer Chinook Salmon Sampled at Bonneville Dam in 1990. June 15, 1991. Jeff Fryer and Matthew Schwartzberg.
• Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1990. May 31, 1991. Douglas R. Hatch and Matthew Schwartzberg.
• Identification of Columbia Basin Sockeye Salmon Stocks Based On Scale Pattern Analyses, 1990. May 25, 1991. Jeff Fryer and Matthew Schwartzberg.
• Age and Length Composition of the Columbia Basin Spring Chinook Salmon Sampled at Bonneville Dam in 1990. March 15, 1991. Matthew Schwartzberg and Jeff Fryer.

1990

• Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1989. May 23, 1990. Douglas R. Hatch and Matthew Schwartzberg.
• Experiments in Indentifying Hatchery and Naturally Spawning Stocks of Columbia Basin Spring Chinook Salmon Using Scale Pattern Analyses, 1989. April 2, 1990. Matthew Schwartzberg and Jeff Fryer.
• Identification of Columbia Basin Sockeye Salmon Stocks Based on Scale Pattern Analyses, 1989. February 20, 1990. Matthew Schwartzberg and Jeff Fryer.
• Age and Length Composition of Columbia Basin Spring Chinook Salmon Sampled at Bonneville Dam in 1989. February 15, 1990. Matthew Schwartzberg and Jeff Fryer.

1989

• Escapement Monitoring of Some Naturally Spawning Columbia River Basic Chinook Salmon Stocks, 1987. December 4, 1989. Alex Heindl and Roy Beaty.
• Columbia River Chinook Salmon Stock Monitoring Project for Stocks Originating Above Bonneville Dam: Field Operations Guide. May 25, 1989. Alex Heindl.
• Evaluating the Species Selectivity of 8- and 9-Inch Mesh Set Gillnets: A 1988 Test Fishery in the John Day Reservoir of the Columbia River. September 1, 1989. B. Paul Lumley and Howard A Schaller.
• Experiments in Identifying Hatchery and Naturally Spawning Stocks of Columbia Basin Spring Chinook Salmon Using Scale Pattern Analyses 1988. May 1, 1989. Matthew Schwartzberg and Jeff Fryer.
• Estimates of Sustainable Exploitation Rates for Columbia River Landlocked White Sturgeon: Evaluating the Importance of a Maximum Size Limit. April 3, 1989. Adolphe Debrot, Howard Schaller, and Michael Matylewich.
• Identification of Columbia Basin Sockeye Salmon Stocks Based On Scale Pattern Analysis, 1988. February 5, 1989. Matthew Schwartzberg and Jeff Fryer.
• Age and Length Composition of Columbia Basin Spring Chinook Salmon Sampled at Bonneville Dam in 1988. January 6, 1989. Matthew Schwartzberg.

1988

• Identification of Columbia Basin Sockeye Stocks Based On Scale Pattern Analysis, 1987. February 25, 1988. Matthew Schwartzberg and Jeff Fryer.
• Age and Length Composition of the Columbia Basin Spring Chinook Salmon Run Sampled at Bonneville Dam in 1987. January 15, 1988. Matthew Schwartzberg.
• A Systems Classification of Watersheds and Streams. January 4, 1988. Dale McCullough.

1987

• Columbia River Salmon Stock Indentification Project for Stocks Originating Above Bonneville Dam: Field Operations Guide. December 28, 1987. Matthew Schwartzberg.
• 1986 Columbia River Spring Dip-net Tribal Subsistence Fishery. May 1, 1987. Howard Schaller.

1986

• Observations on the Accuracy of Redd Counting Techniques Used in the Columbia Basin. June 1, 1986. Matthew Schwartzberg and Phil Roger.
• An Annotated Compendium of Spawning Ground Surveys in the Columbia River Basin Above Bonneville dam, 1960-1984. March 1, 1986. Matthew Schwartzberg and Phil Roger.