The scientists at CRITFC are constantly working on new research to further our understanding of salmon and their habitat. Below are the published papers and technical reports that summarize this work.
All Reports
2018
- Reproductive Performance and Energy Balance in Consecutive and Skip Repeat Spawning Female Steelhead Reconditioned in Captivity. September 1, 2018.
- Anadromous Salmonid Recovery in the Umatilla River Basin, Oregon: A Case Study. December 1, 2000.
- Plasma 11-ketotestosterone in Individual Age 1+ Spring Chinook Salmon Juvenile Males Accurately Predicts Age 2 Maturation Status. June 22, 2018.
- Evaluating Minijack Rates in Spring Chinook Salmon. June 13, 2018.
- Utility of Pooled Sequencing for Association Mapping in Nonmodel Organisms. March 15, 2018.
- Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2016. June 30, 2018.
- Studies into Factors Limiting the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2016 and 2017. June 29, 2018.
- The Sea Lamprey Germline Genome Provides Insights into Programmed Genome Rearrangement and Vertebrate Evolution. February 1, 2018.
- Mechanisms of Thermal Adaptation and Evolutionary Potential of Conspecific Populations to Changing Environments. February 1, 2018.
- Monitoring Salmonid Hatchery Stocks with Parentage Based Tagging technology in the Columbia River Basin. December 6, 2016.
- Supportive Breeding Boosts Natural Population Abundance with Minimal Negative Impacts on Fitness of Wild Chinook Salmon in Johnson Creek. October 12, 2012.
- A Cautionary Tale for in situ Fluorometric Measurement of Stream Chlorophyll a: Influences of Light and Periphyton Biomass. February 16, 2018.
- Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2017. April 1, 2018.
2017
- Are Recent Increases in Columbia Basin Natural-origin Steelhead Adult Return Abundance a Response to Restoration Actions?. March 3, 2017.
- Relative Reproductive Success of Supplemented Upper Yakima River Spring Chinook - Preliminary Report for Broodyear 2007. November 15, 2017.
- Habitat Characteristics and Fish Use of Cold-water Refuges in the Upper Grande Ronde River. April 1, 2017.
- Columbia River Basin Steelhead Kelt Reconditioning Research. May 1, 2017.
- Post-spawning Life History Diversity in Reconditioned Female Clearwater River Steelhead Trout (Oncorhynchus mykiss) Kelts Assessed Using Plasma Estradiol-17β. June 1, 2017.
- Deep Ancestry of Programmed Genome Rearrangement in Lampreys. June 30, 2017.
- Sea-to-sea Survival of Late-run Adult Steelhead (Oncorhynchus mykiss) from the Columbia and Snake Rivers. May 1, 2017.
- Conservation Challenges and Research Needs for Pacific Lamprey in the Columbia River Basin. May 4, 2017.
- Kelt Reconditioning: Giving Wild Steelhead a Boost in the Yakima Basin. January 1, 2017.
- Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2015. May 31, 2017.
- Behavioral Responses of Pacific Lamprey to Alarm Cues. June 1, 2017.
- Studies into Factors Limiting the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2015. May 15, 2017.
- Life History Diversity in Post-Spawn Female Steelhead Trout Assessed Using Plasma Estradiol-17β: Relationship with Growth and Energy Reserves. May 22, 2017.
- Genomic Patterns of Diversity and Divergence of Two Introduced Salmonid Species in Patagonia, South America. April 1, 2017.
- Vive la Résistance: Genome-wide Selection Against Introduced Alleles in Invasive Hybrid Zones. October 25, 2016.
- Methods Supporting the Development of Food Web Metrics from Benthic Macroinvertebrate Data. May 17, 2017.
- Kelt Reconditioning and Reproductive Success Evaluation Research: 2016 Annual Technical Report. March 15, 2017.
- Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2016. April 30, 2017.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2015. March 1, 2017.
- Sex Ratio and Maturation Characteristics of Adult Pacific Lamprey at Willamette Falls, Oregon. March 28, 2017.
- Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2015. March 31, 2016.
- Legacies of Stream Channel Modification Revealed Using General Land Office Surveys, with Implications for Water Temperature and Aquatic Life. February 21, 2017.
- Reconditioning Snake River B-Run Steelhead Kelts: A Research Report. December 1, 2016.
- Using Genetic Pedigree Reconstruction to Estimate Effective Spawner Abundance from Redd Surveys: An Example Involving Pacific Lamprey Entosphenus tridentatus. January 25, 2017.
- Can Stream and Riparian Restoration Offset Climate Change Impacts to Salmon Populations?. March 1, 2017.
- Reproductive Development in Captive Reconditioned Female Steelhead Kelts: Evidence for Consecutive and Skip Spawning Life Histories. December 8, 2016.
2016
- Evaluating Minijack Rates in Spring Chinook: Comparing Minijack Rates Based on Spring Plasma 11-ketotestosterone Levels with Rates Based on Fall Gonadosomatic Index. December 1, 2016.
- Airborne Thermal Infrared Remote Sensing Upper Grande Ronde River Basin, Oregon. December 13, 2010.
- LiDAR Data Collection Phase Grande Ronde River Basin. December 23, 2009.
- Investigating Freshwater and Ocean Effects on Pacific Lamprey and Pacific Eulachon of the Columbia River Basin: Projections Within the Context of Climate Change. October 12, 2016.
- Genotyping-in-Thousands by Sequencing (GT-seq): A Low Cost, High-throughput, Targeted SNP Genotyping Method. July 1, 2016.
- Migrating Adult Steelhead Utilize a Thermal Refuge During Summer Periods with High Water Temperatures. August 9, 2016.
- Differential Adult Migration-timing and Stock-specific Abundance of Steelhead in Mixed Stock Assemblages. August 7, 2016.
- Adaptive Genetic Variation Distinguishes Chilean Blue Mussels (Mytilus chilensis) from Different Marine Environments. June 1, 2016.
- Climate Variables Explain Neutral and Adaptive Variation Within Salmonid Metapopulations: the Importance of Replication in Landscape Genetics. February 1, 2016.
- Maximum Likelihood Estimation of the Proportion of Hatchery-origin Fish on Spawning Grounds Using Coded-wire and Parentage-based Tagging. May 1, 2016.
- Evaluating Steelhead Kelt Treatments to Increase Iteroparous Spawners in the Yakima River Basin. July 15, 2016.
- Physiological Comparisons of Steelhead Kelts Emigrating from the Situk River, AK and Clearwater River, ID. May 28, 2016.
- Genetic Basis of Adult Migration Timing in Anadromous Steelhead Discovered Through Multivariate Association Testing. April 14, 2016.
- Upper Grande Ronde River Basin Stream Temperature Model Expansion. October 1, 2012.
- Upper Grande Ronde River Basin Stream Temperature Modeling. March 29, 2012.
- A Method for Characterizing Late-season Low-flow Regime in the Upper Grande Ronde River Basin, Oregon. April 16, 2016.
- Mapping Tributary Habitat Restoration Projects in the Upper Grande Ronde River to Support Landscape Analysis. January 31, 2015.
- Do We Need to Manage for Iteroparity in Steelhead Trout?. March 1, 2016.
- Wy-Kan-Ush-Mi Wa-Kish-Wit: How Indigenous Knowledge Has Shaped Modern Fisheries Management in the Columbia River. August 15, 2015.
- Environmental Adaptation in Chinook Salmon (Oncorhynchus tshawytscha) Throughout Their North American Range. November 11, 2015.
- Kelt Reconditioning and Reproductive Success Evaluation Research: 2015 Annual Technical Report. March 1, 2016.
- Riparian Vegetation Mapping in the Grande Ronde Watershed, Oregon: Monitoring and Validation of Spring Chinook Habitat Recovery and Population Viability. July 1, 2015.
- Genomics in Conservation: Case Studies and Bridging the Gap Between Data and Application. February 1, 2016.
- 2014 Annual Report: Genetic Assessment of Columbia River Stocks. March 1, 2016.
- Chapter 21: Insights Gained Through Recent Technological Advancements for Conservation Genetics of Pacific Lamprey (Entosphenus tridentatus). January 1, 2016.
- Movement Patterns of Artificially Reconditioned Kelt Steelhead Following Release in the Yakima River Basin. August 15, 2015.
- Genetic Basis of Adult Migration-timing within a Population of Steelhead (Oncorhynchus mykiss). August 15, 2015.
- Seals and Sea Lions in the Columbia River: An Evaluation and Summary of Research. June 1, 2015.
- The Use of Video to Monitor Columbia River Juvenile Salmonids at Bonneville and McNary Dams in 2011. January 1, 2012.
- Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2014. March 21, 2016.
- Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2014. March 21, 2016.
- Differential Expression of Genes That Control Respiration Contribute to Thermal Adaptation in Redband Trout (Oncorhynchus mykiss gairdneri). May 4, 2015.
- Monitoring Recovery Trends in Key Spring Chinook Habitat Variables and Validation of Population Viability Indicators: Annual Report 2009. March 31, 2009.
- Monitoring Recovery Trends in Key Spring Chinook Habitat: Annual Report 2010. March 31, 2010.
- Monitoring Recovery Trends in Key Spring Chinook Habitat: Annual Report 2011. March 31, 2011.
- Monitoring Recovery Trends in Key Spring Chinook Habitat Variables and Validation of Population Viability Indicators: Annual Report 2012. March 31, 2013.
- Monitoring Recovery Trends in Key Spring Chinook Habitat Variables and Validation of Population Viability Indicators: Annual Report 2013. March 31, 2014.
- Assessing the Status and Trends of Spring Chinook Habitat in the Upper Grande Ronde River and Catherine Creek: Annual Report 2014. March 31, 2015.
- Hatchery Steelhead Kelt Reconditioning at Dworshak National Fish Hatchery: A Model for B Run Steelhead. August 17, 2015.
2015
- Effects of Captive Reconditioning and Post-spawning Life History on Reproductive Performance in Female Steelhead (Oncorhynchus mykiss) Kelts. August 1, 2015.
- Age And Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2014. April 27, 2015.
- 2013 Annual Report: Genetic Assessment of Columbia River Stocks. April 1, 2015.
- Kelt Reconditioning and Reproductive Success Evaluation Research: 2014 Annual Technical Report. April 8, 2015.
- Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2013. March 31, 2015.
- Selection for Upper Thermal Tolerance in Rainbow Trout (Oncorhynchus mykiss Walbaum). March 1, 2015.
- Population Differentiation Determined from Putative Neutral and Divergent Adaptive Genetic Markers in Eulachon (Thaleichthys pacificus, Osmeridae), an Anadromous Pacific Smelt. March 1, 2015.
- Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2013. March 1, 2015.
- Transcriptomic Response to Heat Stress Among Ecologically Divergent Populations of Redband Trout. February 1, 2015.
- Genetic Population Structure of Willamette River Steelhead and the Influence of Introduced Stocks. January 16, 2018.
2014
- Association Mapping of Disease Resistance Traits in Rainbow Trout Using Restriction Site Associated DNA Sequencing. December 1, 2014.
- Genotyping-in-thousands by Sequencing (GT-seq): A Cost Effective SNP Genotyping Method Based on Custom Amplicon Sequencing. December 1, 2014.
- Collection and Assessment of Emigrating Snake River Steelhead (Oncorhynchus mykiss) Kelts at Lower Granite Dam. September 3, 2014.
- Comparison of DIDSON Versus Video Estimates of 2013 Spring Chinook and Steelhead Escapement to the Upper Basin of the Klickitat River. August 15, 2014.
- Genetic Parentage Analysis to Evaluate Reproductive Success of Spring Chinook Salmon (Oncorhynchus tshawytscha) in Newsome Creek, Idaho: 2013 Annual Report.. August 10, 2014.
- A ‘Behaviorscape’ Perspective on Stream Fish Ecology and Conservation: Linking Fish Behavior to Riverscapes. July 1, 2014.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2013. June 18, 2014.
- A Genetic Analysis of the Summer Steelhead Stock Composition in the Columbia River and Snake River Tribal and Sport Fisheries from July 1, 2012 to March 31, 2013. June 1, 2014.
- Relative Contributions of Neutral and Non-neutral Genetic Differentiation to Inform Conservation of Steelhead Trout Across Highly Variable Landscapes. June 1, 2014.
- Genes Predict Long Distance Migration and Large Body Size in a Migratory Fish, Pacific Lamprey. June 1, 2014.
- Use of Genotyping by Sequencing Data to Develop a High-throughput and Multifunctional SNP Panel for Conservation Applications in Pacific Lamprey. June 1, 2014.
- Identifying Stakeholder-relevant Climate Change Impacts: A Case Study in the Yakima River Basin, Washington, USA. May 1, 2014.
- A Stakeholder Project to Model Water Temperature Under Future Climate Scenarios in the Satus and Toppenish Watersheds of the Yakima River Basin in Washington, USA. May 1, 2014.
- Watershed History Revealed Through Government Land Office Surveys: Detecting Change Over a Century of Land Use in the Columbia River Basin. May 17, 2014.
- 2012 Annual Report: Genetic Assessment of Columbia River Stocks. April 1, 2014.
- Archival Genetic Analysis Suggests Recent Immigration Has Altered a Population of Chinook Salmon in an Unsupplemented Wilderness Area. April 1, 2014.
- Climate Change and Indigenous Peoples in the United States: Impacts, Experiences and Actions. January 23, 2015.
- Upstream Migration Timing of Columbia Basin Chinook and Sockeye Salmon and Steelhead in 2012. March 17, 2014.
- Extirpation and Tribal Reintroduction of Coho Salmon to the Interior Columbia River Basin. February 26, 2014.
- Monitoring Stock-Specific Abundance, Run Timing, and Straying of Chinook Salmon in the Columbia River Using Genetic Stock Identification (GSI). February 10, 2014.
- Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2012. January 15, 2014.
- Testing for Delayed Mortality Effects in the Early Marine Life History of Columbia River Basin Yearling Chinook Salmon. January 27, 2014.
- Kelt Reconditioning and Reproductive Success Evaluation Research: 2013 Annual Technical Report. January 1, 2014.
2013
- Analyses for Effect of Survey Week and Reach in Mark-recapture Studies of Metolius River Kokanee Oncorhynchus nerka. December 18, 2013.
- Climate Change Impacts on the Water Resources of American Indians and Alaska Natives in the U.S.. August 30, 2013.
- A Validation of Parentage-based Tagging Using Hatchery Steelhead in the Snake River Basin. June 24, 2013.
- 2012 Spring Chinook Escapement to the Upper Basin of the Klickitat River Based on DIDSON Sonar Counts. June 19, 2013.
- Thermal Adaptation and Acclimation of Ectotherms from Differing Aquatic Climates. June 1, 2013.
- Genotyping-by-sequencing in Ecological and Conservation Genomics. June 1, 2013.
- Survival and Traits of Reconditioned Kelt Steelhead Oncorhynchus mykiss in the Yakima River, Washington. May 24, 2013.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2012. April 18, 2013.
- Changing Streamflow on Columbia Basin Tribal Lands—Climate Change and Salmon. April 17, 2013.
- Upstream Migration Timing of Columbia Basin Chinook Salmon, Sockeye Salmon, and Steelhead in 2011. March 31, 2013.
- Discovery and Characterization of Novel Genetic Markers for use in the Management of Lahontan Cutthroat Trout (Oncorhynchus clarkii henshawi). March 1, 2013.
- Divergent Life-history Races Do Not Represent Chinook Salmon Coast-wide: The Importance of Scale in Quaternary Biogeography. March 1, 2013.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2011. January 23, 2013.
2012
- Population Genomics of Pacific Lamprey: Adaptive Variation in a Highly Dispersive Species. December 3, 2012.
- Supportive Breeding Boosts Natural Population Abundance with Minimal Negative Impacts on Fitness of a Wild Population of Chinook Salmon. November 1, 2012.
- A Simulation of Water Temperature in the Upper Grande Ronde Basin with Future Climate Change Scenarios. October 25, 2012.
- Population-specific Escapement of Columbia River Fall Chinook Salmon: Tradeoffs Among Estimation Techniques. October 1, 2012.
- Genome-wide Association Reveals Genetic Basis for the Propensity to Migrate in Wild Populations of Rainbow and Steelhead Trout. September 12, 2012.
- Development and Evaluation of 200 Novel SNP Assays for Population Genetic Studies of Westslope Cutthroat Trout and Genetic Identification of Related Taxa. September 1, 2012.
- Estimating Abundance and Life History Characteristics of Threatened Wild Snake River Steelhead Stocks by Using Genetic Stock Identification. August 16, 2012.
- Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2011. August 10, 2012.
- Integrated Forecasts of Fall Chinook Salmon Returns to the Pacific Northwest. August 1, 2012.
- Steelhead Kelt Reconditioning and Reproductive Success: 2011 Annual Report. June 29, 2012.
- Linkages between Life History Type and Migration Pathways in Freshwater and Marine Environments for Chinook Salmon, Oncorhynchus tshawytscha. May 1, 2012.
- Influences of Hatchery Supplementation, Spawner Distribution, and Habitat on Genetic Structure of Chinook Salmon in the South Fork Salmon River, Idaho. April 25, 2012.
- Genetic Evaluation of Steelhead Trout (Oncorhynchus mykiss) in the Rock Creek Watershed of the Middle Columbia River Basin. April 14, 2012.
- Relating Spatial and Temporal Scales of Climate and Ocean Variability to Survival of Pacific Northwest Chinook Salmon (Oncorhynchus tshawytscha). September 26, 2012.
- 2011 Annual Report: Genetic Assessment of Columbia River Stocks. March 31, 2012.
- Upstream Migration Timing of Columbia Basin Chinook Salmon, and Sockeye Salmon and Steelhead in 2010. March 31, 2012.
- 2011 Spring Chinook Escapement to the Upper Basin of the Klickitat River Based on DIDSON Sonar Counts. February 17, 2012.
2011
- Accounting for Tag Loss and Its Uncertainty in a Mark–recapture Study with a Mixture of Single and Double Tags. December 27, 2011.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2010. December 16, 2011.
- Sea Lion Monitoring and Non-lethal Hazing. December 15, 2011.
- Estimating Critical Abundance Thresholds in Exploited Populations: A Simulation Approach Based on Species Resilience to Disturbance. December 1, 2011.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2009. November 16, 2011.
- Introgressive Hybridization Among Major Columbia River Chinook Salmon (Oncorhynchus tshawytscha) Lineages Within the Klickitat River Due to Hatchery Practices. November 1, 2011.
- Genetic Stock Structure, Relative Productivity and Migration (Gene Flow) of White Sturgeon Among Bonneville, The Dalles, John Day and McNary Reservoirs in the Lower Mid-Columbia River Region. October 31, 2011.
- Upstream Migration Timing of Columbia Basin Chinook, Sockeye Salmon and Steelhead in 2009. October 7, 2011.
- Precision and Accuracy of Estimators of the Proportion of Hatchery-origin Spawners. August 19, 2011.
- The Impact on Coldwater-fish Populations of Interpretative Differences in the Application of the United States Clean Water Act 1972 by Individual State Legislatures. August 1, 2011.
- Limiting Factors of the Abundance of Okanagan and Wenatchee Sockeye Salmon in 2010. June 30, 2011.
- Steelhead Kelt Reconditioning and Reproductive Success 2010 Annual Report. June 29, 2011.
- Introduction to a Special Section: Genetic Adaptation of Natural Salmonid Populations. June 17, 2011.
- Candidate Genetic Markers Associated with Anadromy in Oncorhynchus mykiss of the Klickitat River. June 17, 2011.
- Relative Genetic Diversity Estimates Among Four Pacific Salmonids. June 17, 2011.
- Major Lineages and Metapopulations in Columbia River Oncorhynchus mykiss are Structured by Dynamic Landscape Features and Environments. June 17, 2011.
- Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam: Annual Progress Report July 1, 2010 — June 30, 2011. June 17, 2011.
- Resolving Adaptive and Demographic Divergence Among Chinook Salmon Populations in the Columbia River Basin. June 17, 2011.
- A Computer Program for Calculating the Distance Between Sites in the Columbia River Basin. June 10, 2011.
- Single-Nucleotide Polymorphism (SNP) Loci Correlated with Run Timing in Adult Chinook Salmon from the Columbia River Basin. June 1, 2011.
- Climate Change, Salmon and Steelhead, and the Columbia River Tribes. May 27, 2011.
- A Review of Genetic Evaluation Tools for Conservation and Management of North American Sturgeons: Roles, Benefits, and Limitations. May 7, 2011.
- 2010 Annual Report: Genetic Assessment of Columbia River Stocks. March 31, 2011.
- Development of 54 Novel Single-nucleotide Polymorphism (SNP) Assays for Sockeye and Coho Salmon and Assessment of Available SNPs to Differentiate Stocks Within the Columbia River. February 17, 2011.
- Comparison of FST Outlier Tests for SNP Loci Under Selection. February 6, 2011.
- 2010 Spring Chinook Escapement to the Upper Basin of the Klickitat River Based on DIDSON Sonar Counts. January 10, 2011.
- Comparison of SNPs and Microsatellites for Fine-scale Application of Genetic Stock Identification of Chinook Salmon in the Columbia River Basin. January 10, 2011.
- Using Hierarchical Models to Estimate Effects of Ocean Anomalies on North-west Pacific Chinook Salmon Oncorhynchus tshawytscha Recruitment. January 1, 2011.
2010
- Are Coldwater Fish Populations of the United States Actually Being Protected by Temperature Standards?. December 1, 2010.
- Studies into Factors Limiting the Abundance of Okanagan and Wenatchee Sockeye Salmon. October 15, 2010.
- Adaptation of Redband Trout in Desert and Montane Environments. September 30, 2010.
- Examining Genetic Lineages of Chinook Salmon in the Columbia River Basin. September 22, 2010.
- Sequence Divergence of Heat Shock Genes Within and Among 3 Oncorhynchids. September 22, 2010.
- Observations of Fish Behavior Recorded by a DIDSON Sonar Concurrent with Blasting Events During Renovation of the Lyle Falls Fish Ladder. September 1, 2010.
- 2009 Draft Annual Report: Steelhead Kelt Reconditioning and Reproductive Success. June 29, 2010.
- Relationships between Growth and Disease Resistance in Rainbow Trout, Oncorhynchus mykiss (Walbaum). April 1, 2010.
- 2009 Spring Chinook Escapement to the Upper Basin of the Klickitat River Based on DIDSON Sonar Counts. March 1, 2010.
- 2009 Annual Report: Genetic Assessment of Columbia River Stocks. February 16, 2010.
- High-Throughput SNP Genotyping in Salmon and Steelhead. January 1, 2010.
2009
- Field Report: 2009 Pinniped Management Activities at and Below Bonneville Dam. December 10, 2009.
- An Evaluation of CRITFC-Coordinated Habitat Restoration Projects and Limiting Factors to Salmon and Steelhead in the Columbia Basin. December 1, 2009.
- A Field Study to Investigate Repeat Homing in Pacific Lampreys. December 1, 2009.
- Identification and Characterization of Heat Shock Response Related Single Nucleotide Polymorphisms in O. mykiss and O. tshawytscha - in Permanent Genetic Resources Added to Molecular Ecology Resources Database 1 May 2009–31 July 2009. November 1, 2009.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2008. May 15, 2009.
- Estimation of Mid-Columbia Summer Chinook Salmon Escapement and Age Composition Using PIT Tags in 2008. May 11, 2009.
- Ocean Harvest Real-Time Forecasts of Fall Chinook Salmon (Oncorhynchus tshawytscha) Returns to the Columbia River. April 24, 2009.
- The Use of Generalized Additive Models for Forecasting the Abundance of Queets River Coho Salmon. April 20, 2009.
- Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 1998. March 31, 2009.
- Water Supply Forecast Correction Curves. February 1, 2009.
- Use of PIT Tags to Determine Upstream Migratory Timing and Survival of Columbia Basin Sockeye Salmon in 2008. January 31, 2009.
- Research in Thermal Biology: Burning Questions for Coldwater Stream Fishes. January 1, 2009.
- Survival, Maturation, Ocean Distribution and Recruitment of Pacific Northwest Chinook Salmon (Oncorhynchus tshawytscha) in Relation to Environmental Factors, and Implications for Management. January 1, 2009.
- Characterization of 22 Novel Single Nucleotide Polymorphism Markers in Steelhead and Rainbow Trout. January 1, 2009.
2008
- Stream Trees: A Statistical Method for Mapping Genetic Differences Between Populations of Freshwater Organisms to the Sections of Streams that Connect Them. December 6, 2008.
- Localized Genetic Structure Persists in Wild Populations of Chinook Salmon in the John Day River Despite Gene Flow from Outside Sources. November 20, 2008.
- A Centralized Model for Creating Shared, Standardized, Microsatellite Data that Simplifies Inter-laboratory Collaboration. October 22, 2008.
- Field Report: 2008 Pinniped Management Activities at Bonneville Dam. September 23, 2008.
- Quantitative PCR Assessment of Microsatellite and SNP Genotyping with Variable Quality DNA Extracts. August 23, 2008.
- Procedures for Estimating Tag Loss Rate and Spawning Escapement in a Mark-recapture Study of Metolius River Kokanee Oncorhynchus nerka. August 4, 2008.
- A GIS Analysis of Climate Change and Snowpack on Columbia Basin Tribal Lands. May 27, 2008.
- 2007 Annual Report: Steelhead Kelt Reconditioning and Reproductive Success. May 12, 2008.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2007. April 3, 2008.
- Estimation of Mid-Columbia Summer Chinook Salmon Escapement and Age Composition Using PIT Tags in 2007. January 15, 2008.
- Identification of Novel Single-nucleotide Polymorphisms in Chinook Salmon and Variation Among Life History Types. January 14, 2008.
- Use of PIT tags to Determine Upstream Migratory Timing and Survival of Columbia Basin Sockeye Salmon in 2007. January 31, 2008.
- Differentiating Salmon Populations at Broad and Fine Geographical Scales with Microsatellites and Single Nucleotide Polymorphisms. January 1, 2008.
- Influence of Landscape on Resident and Anadromous Life History Types of Oncorhynchus mykiss. January 1, 2008.
2007
- Impacts of Marker Class Bias Relative to Locus-specific Variability on Population Inferences in Chinook Salmon: A Comparison of Single-nucleotide Polymorphisms with Short Tandem Repeats and Allozymes. November 29, 2007.
- Development of a Standardized DNA Database for Chinook Salmon. November 1, 2007.
- Bayesian Decision Analysis for Status of Snake River Spring-Summer Chinook Salmon Oncorhynchus tshawytscha Populations at Extinction Risk. July 31, 2007.
- Iteroparity in Complex Mating Systems of Steelhead Oncorhynchus mykiss (Walbaum). July 9, 2007.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2006. March 12, 2007.
- An Evaluation of the Reproductive Success of Natural-origin, Hatchery-origin and Kelt Steelhead in the Columbia Basin: Annual Report 2006. March 1, 2007.
- Identification of Columbia Basin Sockeye Salmon Stocks in 2006. February 27, 2007.
- Estimation of Mid-Columbia Summer Chinook Salmon Escapement and Age Composition using PIT tags in 2006. February 24, 2007.
- Use of PIT Tags to Determine Upstream Migratory Timing and Survival of Columbia Basin Sockeye Salmon in 2006. February 21, 2007.
- Genetic Stock Identification of Chinook Salmon Mixtures at Bonneville Dam. Final Report to the Pacific Salmon Commission.. January 31, 2007.
- Reproductive Isolation Following Reintroduction of Chinook Salmon with Alternative Life Histories. January 13, 2007.
- Genetic Variation and Structure of Chinook Salmon Life History Types in the Snake River. January 1, 2007.
- Year-to-year Variability in Ocean Recovery Rate of Columbia River Upriver Bright Fall Chinook Salmon (Oncorhynchus tshawytscha). January 1, 2007.
2006
- Kelt Reconditioning: A Research Project to Enhance Iteroparity in Columbia Basin Steelhead (Oncorhynchus mykiss) - 2006 Annual Report. December 1, 2006.
- Kelt Reconditioning: A Research Project to Enhance Iteroparity in Columbia Basin Steelhead (Oncorhynchus mykiss) - 2005 Annual Report. December 1, 2006.
- Summer Chinook Juvenile Sampling and Adult Monitoring in the Mid-Columbia. October 24, 2006.
- Beyond Bonferroni: Less Conservative Analyses for Conservation Genetics. October 1, 2006.
- Monitoring Fine Sediment: Grande Ronde and John Day Rivers, 2004 Final Report. September 1, 2006.
- Preseason Forecasts of Ocean Escapements of Columbia River Chinook salmon (Oncorhynchus tshawytscha). June 30, 2006.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2005. April 6, 2006.
- Identification of Columbia Basin Sockeye Salmon Stocks in 2005. April 5, 2006.
- Altered Flood Control, Climate Change, and Rebuilding Pacific Northwest Salmon Stocks. March 24, 2006.
- 2005 Annual Report: An Evaluation of the Reproductive Success of Natural-origin, Hatchery-origin, and Kelt Steelhead in the Columbia Basin. March 16, 2006.
- Microsatellites Reveal Population Substructure of Klickitat River Native Steelhead and Genetic Divergence from an Introduced Stock. January 18, 2006.
- An Evaluation of the Clearwater River Supplementation Program in Western Washington. January 18, 2006.
- Small-Scale Genetic Structure and Variation in Steelhead of the Grande Ronde River, Oregon, USA. January 1, 2006.
- 2004-2006 US LOA Chinook Draft Report: Fixes or Alternatives to the Individual Stock Based Management (ISBM) Provisions. January 1, 2006.
2005
- Validation of a Long-range Dual Frequency Identification Sonar (DIDSON-LR) for Fish Passage Enumeration in the Methow River. November 1, 2005.
- Identification of Columbia Basin Sockeye Salmon Stocks in 2004. April 8, 2005.
- Age and Length Composition of Columbia Basin Chinook and Sockeye Salmon and Steelhead at Bonneville Dam in 2004. March 31, 2005.
- Using Simulation Techniques to Estimate Management Parameters on Snake River Steelhead: Declines in Productivity Make Rebuilding Difficult. March 17, 2005.
- A Statistical Model for In-season Forecasts of Sockeye Salmon (Oncorhynchus nerka) Returns to the Bristol Bay Districts of Alaska. January 1, 2005.
- Documenting the Existing Individual Stock Based Management (ISBM) Provision of the Chinook Chapter of the Pacific Salmon Treaty: Data, Methods, User Guide and Limitations. January 1, 2005.
- A Quantitative Framework for the Analysis of Habitat and Hatchery Practices on Pacific Salmon. January 1, 2005.
2004
- Kelt Reconditioning: A Research Project to Enhance Iteroparity in Columbia Basin Steelhead (Oncorhynchus mykiss) - 2004 Annual Report. November 1, 2004.
- Genetic Divergence of Sympatric Resident and Anadromous Forms of Oncorhynchus mykiss in the Walla Walla River, U.S.A.. August 1, 2004.
- A Distinctive Microsatellite Locus That Differentiates Ocean-type from Stream-type Chinook Salmon in the Interior Columbia River Basin. July 1, 2004.
- Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 2003. March 31, 2004.
- Identification of Columbia Basin Sockeye Salmon Stocks in 2003. March 18, 2004.
- Three Genetic Stocks of Upriver Bright Fall Chinook Salmon Detected in the Columbia River Basin, USA. January 1, 2004.
2003
- Evaluate Steelhead (Oncorhynchus mykiss) Kelt Outmigration from Lower Granite Dam to Bonneville Dam and Test the Use of Transportation to Increase Returns of Repeat Spawners. October 9, 2003.
- Kelt Reconditioning: A Research Project to Enhance Iteroparity in Columbia Basin Steelhead (Oncorhynchus mykiss) - 2002 Annual Report. July 9, 2003.
- Development of a Stock Assessment and Research Plan for Mid-Columbia Summer Chinook Salmon. May 1, 2003.
- Tribal Energy Vision. May 1, 2003.
- Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 2002. April 20, 2003.
- Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 2002. March 20, 2003.
- Beliefs, Values, and Technical Assessment in Environmental Management: Contaminated Sediments in Puget Sound. January 1, 2003.
2002
- Hatchery Contribution to a Natural Population of Chinook in the Hanford Reach of the Columbia River, Washington. August 1, 2002.
- Multiple Lines of Evidence for Determining Upper Optimal Temperature Thresholds for Bull Trout. June 27, 2002.
- Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 2001. March 30, 2002.
2001
- Quantitative Methods of Developing Escapement Goals in the Columbia River Basin: A Scientific Perspective. November 27, 2001.
- Empirical Relationships Between Watershed Characteristics and Coho Salmon (Oncorhynchus kisutch) Smolt Abundance in 14 Western Washington Streams. June 21, 2001.
- Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 2000. May 30, 2001.
- Summary of Technical Literature Examining the Physiological Effects of Temperature on Salmonids. May 1, 2001.
- Proceedings from the Columbia River Basin Tribal Water Quality Conference. May 1, 2001.
- Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 2001. January 31, 2002.
- Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 2000. February 9, 2001.
2000
1999
- Age and Length Composition of Columbia Basin Chinook, Sockeye, and Coho Salmon at Bonneville Dam in 1999. December 14, 1999.
- Cumulative Impacts on the Peoples of the Nez Perce, Yakama, Umatilla, and Warm Springs Indian Reservations from Construction and Operation of US Army Corps of Engineers’ Dams in the Columbia River Basin Upstream of Bonneville Dam, Inclusive. March 31, 1999.
- Monitoring of Streambank Stability and Streamside Vegetation in a Livestock Exclosure on the Warm Springs River, Oregon: Comparison of Ground-Based Surveys with Aerial Photographic Analysis. March 16, 1999.
- A Review and Synthesis of Effects of Alterations to the Water Temperature Regime on Freshwater Life Stages of Salmonids, with Special Reference to Chinook Salmon. February 22, 1999.
1997
1996
- Changes in Size and Age at Maturity of Columbia River Upriver Bright Fall Chinook Salmon (Oncorhynchus tshawytscha): Implications for Stock Fitness, Commercial Value, and Management. August 30, 1996.
- Evaluation of Deschutes River Fall Chinook Salmon. July 1, 1996.
- A Monitoring Strategy for Application to Salmon-Bearing Watersheds. June 4, 1996.
1995
- A Comparison and Evaluation of Existing Land Management Plans Affecting Spawning and Rearing Habitat of Snake River Basin Salmon Species Listed Under the Endangered Species Act. September 1, 1995.
- Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1994. March 30, 1995.
- Age and Length Composition of Columbia Basin Spring and Summer Chinook Salmon at Bonneville Dam in 1994. April 3, 1995.
1994
- A Coarse Screening Process for Evaluation of the Effects of Land Management Activities on Salmon Spawning and Rearing Habitat in ESA Consultations. December 1, 1994.
- A Fish Consumption Survey of the Umatilla, Nez Perce, Yakama, and Warm Springs Tribes of the Columbia River Basin. October 1, 1994.
- Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 1993. July 1, 1994.
- Age and Length Composition of Columbia Basin Spring and Summer Chinook Salmon at Bonneville Dam in 1993. February 21, 1994.
1993
- Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1992. March 26, 1993.
- Identifying Hatchery and Naturally Spawning Stocks of Columbia Basin Summer Chinook Salmon Using Scale Pattern Analyses in 1990. February 22, 1993.
- Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analyses in 1992. February 22, 1993.
- Age and Length Composition of Columbia Basin Spring and Summer Chinook Salmon at Bonneville Dam in 1992. February 22, 1993.
- 1992 Columbia River Fish Runs and Fisheries. January 4, 1993.
1992
- Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1991. March 12, 1992.
- Identification of Columbia Basin Sockeye Salmon Stocks Using Scale Pattern Analysis in 1991. February 11, 1992.
- Age and Length Composition of Columbia Basin Summer Chinook Salmon at Bonneville Dam in 1991. February 19, 1992.
- Age and Length Composition of the Columbia Basin Spring Chinook Salmon Sampled at Bonneville Dam in 1991. February 11, 1992.
1991
- Age and Length Composition of the Columbia Basin Summer Chinook Salmon Sampled at Bonneville Dam in 1990. June 15, 1991.
- Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1990. May 31, 1991.
- Identification of Columbia Basin Sockeye Salmon Stocks Based On Scale Pattern Analyses, 1990. May 25, 1991.
- Age and Length Composition of the Columbia Basin Spring Chinook Salmon Sampled at Bonneville Dam in 1990. March 15, 1991.
1990
- Wenatchee River Salmon Escapement Estimates Using Video Tape Technology in 1989. May 23, 1990.
- Experiments in Indentifying Hatchery and Naturally Spawning Stocks of Columbia Basin Spring Chinook Salmon Using Scale Pattern Analyses, 1989. April 2, 1990.
- Identification of Columbia Basin Sockeye Salmon Stocks Based on Scale Pattern Analyses, 1989. February 20, 1990.
- Age and Length Composition of Columbia Basin Spring Chinook Salmon Sampled at Bonneville Dam in 1989. February 15, 1990.
1989
- Escapement Monitoring of Some Naturally Spawning Columbia River Basic Chinook Salmon Stocks, 1987. December 4, 1989.
- Columbia River Chinook Salmon Stock Monitoring Project for Stocks Originating Above Bonneville Dam: Field Operations Guide. May 25, 1989.
- Evaluating the Species Selectivity of 8- and 9-Inch Mesh Set Gillnets: A 1988 Test Fishery in the John Day Reservoir of the Columbia River. September 1, 1989.
- Experiments in Identifying Hatchery and Naturally Spawning Stocks of Columbia Basin Spring Chinook Salmon Using Scale Pattern Analyses 1988. May 1, 1989.
- Estimates of Sustainable Exploitation Rates for Columbia River Landlocked White Sturgeon: Evaluating the Importance of a Maximum Size Limit. April 3, 1989.
- Identification of Columbia Basin Sockeye Salmon Stocks Based On Scale Pattern Analysis, 1988. February 5, 1989.
- Age and Length Composition of Columbia Basin Spring Chinook Salmon Sampled at Bonneville Dam in 1988. January 6, 1989.
1988
- Identification of Columbia Basin Sockeye Stocks Based On Scale Pattern Analysis, 1987. February 25, 1988.
- Age and Length Composition of the Columbia Basin Spring Chinook Salmon Run Sampled at Bonneville Dam in 1987. January 15, 1988.
- A Systems Classification of Watersheds and Streams. January 4, 1988.
1987
- Columbia River Salmon Stock Indentification Project for Stocks Originating Above Bonneville Dam: Field Operations Guide. December 28, 1987.
- 1986 Columbia River Spring Dip-net Tribal Subsistence Fishery. May 1, 1987.